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Report for CCDS6653.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
6653.1 |
Public |
Homo sapiens |
9 |
GCNT1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:2650](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:6653.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:2650](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 6653.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000376730.5 |
ENSP00000365920.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000376730.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000365920.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000376730](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000365920](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000444201.6 |
ENSP00000390703.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000444201.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000390703.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000444201](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000390703](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000442371.5 |
ENSP00000415454.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000442371.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000415454.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000442371](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000415454](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001097633.2 |
NP_001091102.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001097633.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001091102.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001097633](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001091102](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001091102.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001097634.1 |
NP_001091103.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001097634.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001091103.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001097634](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001091103](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001091103.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001097635.2 |
NP_001091104.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001097635.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001091104.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001097635](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001091104](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001091104.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001097636.2 |
NP_001091105.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001097636.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001091105.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001097636](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001091105](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001091105.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001490.5 |
NP_001481.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001490.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001481.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001490](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001481](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001481.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 6653.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1287 nt): ATGCTGAGGACGTTGCTGCGAAGGAGACTTTTTTCTTATCCCACCAAATACTACTTTATGGTTCTTGTTT TATCCCTAATCACCTTCTCCGTTTTAAGGATTCATCAAAAGCCTGAATTTGTAAGTGTCAGACACTTGGA GCTTGCTGGGGAGAATCCTAGTAGTGATATTAATTGCACCAAAGTTTTACAGGGTGATGTAAATGAAATC CAAAAGGTAAAGCTTGAGATCCTAACAGTGAAATTTAAAAAGCGCCCTCGGTGGACACCTGACGACTATA TAAACATGACCAGTGACTGTTCTTCTTTCATCAAGAGACGCAAATATATTGTAGAACCCCTTAGTAAAGA AGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAGATTGAAATGCTTGACAGGCTGCTG AGGGCCATCTATATGCCTCAGAATTTCTATTGCATTCATGTGGACACAAAATCCGAGGATTCCTATTTAG CTGCAGTGATGGGCATCGCTTCCTGTTTTAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTA TGCATCGTGGAGCCGGGTTCAGGCTGACCTCAACTGCATGAAGGATCTCTATGCAATGAGTGCAAACTGG AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCCATTAAAACCAACCTAGAAATTGTCAGGAAGCTCA AGTTGTTAATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCCATAAAGAAGAAAGGTGGAAGAA GCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACAGGGACTGTCAAAATGCTTCCTCCACTCGAAACA CCTCTCTTTTCTGGCAGTGCCTACTTCGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAA AAATCCAAAAGTTGATGGAGTGGGCACAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACCATCCA AAGGATTCCTGAAGTCCCGGGCTCACTCCCTGCCAGCCATAAGTATGATCTGTCTGACATGCAAGCAGTT GCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCCTACCCGCCCTGCGATG GAGTCCATGTGCGCTCAGTGTGCATTTTCGGAGCTGGTGACTTGAACTGGATGCTGCGCAAACACCACTT GTTTGCCAATAAGTTTGACGTGGATGTTGACCTCTTTGCCATCCAGTGTTTGGATGAGCATTTGAGACAC AAAGCTTTGGAGACATTAAAACACTGA
Translation (428 aa): MLRTLLRRRLFSYPTKYYFMVLVLSLITFSVLRIHQKPEFVSVRHLELAGENPSSDINCTKVLQGDVNEI QKVKLEILTVKFKKRPRWTPDDYINMTSDCSSFIKRRKYIVEPLSKEEAEFPIAYSIVVHHKIEMLDRLL RAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASRLESVVYASWSRVQADLNCMKDLYAMSANW KYLINLCGMDFPIKTNLEIVRKLKLLMGENNLETERMPSHKEERWKKRYEVVNGKLTNTGTVKMLPPLET PLFSGSAYFVVSREYVGYVLQNEKIQKLMEWAQDTYSPDEYLWATIQRIPEVPGSLPASHKYDLSDMQAV ARFVKWQYFEGDVSKGAPYPPCDGVHVRSVCIFGAGDLNWMLRKHHLFANKFDVDVDLFAIQCLDEHLRH KALETLKH
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