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Report for CCDS48028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48028.1 Public Homo sapiens 9 SH2D3C 24 110 108 CCDS HistoryNCBI Gene:10044Re-query CCDS DB by CCDS ID:48028.1Re-query CCDS DB by GeneID:10044See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429553.5 ENSP00000394632.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429553.5Link to Ensembl Protein Viewer:ENSP00000394632.1Re-query CCDS DB by Nucleotide ID:ENST00000429553Re-query CCDS DB by Protein ID:ENSP00000394632
Original member Current member NCBI NM_001142531.1 NP_001136003.1 Accepted alive Link to Nucleotide Sequence:NM_001142531.1Link to Protein Sequence:NP_001136003.1Re-query CCDS DB by Nucleotide ID:NM_001142531Re-query CCDS DB by Protein ID:NP_001136003Link to BLAST:NP_001136003.1
Original member Current member NCBI NM_001142532.1 NP_001136004.1 Accepted alive Link to Nucleotide Sequence:NM_001142532.1Link to Protein Sequence:NP_001136004.1Re-query CCDS DB by Nucleotide ID:NM_001142532Re-query CCDS DB by Protein ID:NP_001136004Link to BLAST:NP_001136004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136003.1 506 Q8N5H7-3 506 100% 0 0
NP_001136004.1 506 Q8N5H7-3 506 100% 0 0

Chromosomal Locations for CCDS 48028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 127738746 127738921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127739682 127739888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127740258 127740369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127741788 127741959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127742849 127742964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127744564 127745099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127747147 127747271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 127749211 127749287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGAAGCGGCGCAGCGTCACCATGACCGATGGGCTCACTGCTGACAAGGTCACCCGCAGCGATGGCTGCC
CCACCAGTACGTCGCTGCCCCGCCCTCGGGACTCCATCCGCAGCTGTGCCCTCAGCATGGACCAGATCCC
AGACCTGCACTCACCCATGTCGCCCATCTCCGAGAGCCCTAGCTCCCCTGCCTACAGCACTGTAACCCGT
GTCCATGCCGCCCCTGCAGCCCCTTCTGCCACAGCATTGCCTGCCTCCCCTGTCGCCCGCCGTTCCAGTG
AGCCCCAGCTGTGTCCCGGAAGTGCCCCAAAGACCCATGGGGAGTCAGACAAGGGCCCCCACACCAGCCC
CTCCCACACCCTTGGCAAGGCCTCCCCGTCACCATCACTCAGCAGCTACAGTGACCCGGACTCTGGCCAC
TACTGCCAGCTCCAGCCTCCCGTGCGTGGCAGCCGAGAGTGGGCAGCGACTGAGACCTCCAGCCAGCAGG
CCAGGAGCTATGGGGAGAGGCTAAAGGAACTGTCAGAAAATGGGGCCCCTGAAGGGGACTGGGGCAAGAC
CTTCACAGTCCCCATCGTGGAAGTCACTTCTTCCTTCAACCCGGCCACCTTCCAGTCACTACTGATCCCC
AGGGATAACCGGCCACTGGAGGTGGGCCTTCTGCGCAAGGTCAAGGAGCTGCTGGCAGAAGTGGATGCCC
GGACGCTGGCCCGGCATGTCACCAAGGTGGACTGCCTGGTTGCTAGGATACTGGGCGTTACCAAGGAGAT
GCAGACCCTAATGGGAGTCCGCTGGGGCATGGAACTGCTCACCCTCCCCCATGGCCGGCAGCTACGCCTA
GACCTGCTGGAAAGGTTCCACACCATGTCCATCATGCTGGCCGTGGACATCCTGGGCTGCACCGGCTCTG
CGGAGGAGCGGGCAGCGCTGCTGCACAAGACCATTCAGCTGGCGGCCGAGCTGCGGGGGACTATGGGCAA
CATGTTCAGCTTCGCGGCGGTCATGGGTGCCCTGGACATGGCCCAGATTTCTCGGCTGGAGCAGACATGG
GTGACCCTGCGGCAGCGACACACAGAGGGTGCCATCCTGTACGAGAAGAAGCTCAAGCCTTTTCTCAAGA
GCCTCAACGAGGGCAAAGAAGGCCCGCCGCTGAGCAACACCACGTTTCCTCATGTGCTGCCCCTCATCAC
CCTGCTGGAGTGTGACTCGGCCCCACCAGAGGGCCCTGAGCCCTGGGGCAGCACGGAGCACGGCGTGGAG
GTGGTGCTGGCTCACCTGGAGGCCGCCCGCACAGTGGCACACCACGGAGGCCTGTACCACACCAATGCTG
AAGTCAAGCTGCAGGGGTTCCAGGCCCGGCCGGAGCTCCTGGAGGTGTTCAGCACGGAGTTCCAGATGCG
CCTTCTCTGGGGCAGTCAGGGTGCCAGCAGCAGCCAGGCCCGGCGCTATGAGAAGTTCGACAAGGTCCTC
ACTGCCCTGTCCCACAAGCTGGAACCTGCTGTCCGCTCCAGCGAGCTGTGA

Translation (506 aa):
MKRRSVTMTDGLTADKVTRSDGCPTSTSLPRPRDSIRSCALSMDQIPDLHSPMSPISESPSSPAYSTVTR
VHAAPAAPSATALPASPVARRSSEPQLCPGSAPKTHGESDKGPHTSPSHTLGKASPSPSLSSYSDPDSGH
YCQLQPPVRGSREWAATETSSQQARSYGERLKELSENGAPEGDWGKTFTVPIVEVTSSFNPATFQSLLIP
RDNRPLEVGLLRKVKELLAEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRL
DLLERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTW
VTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLECDSAPPEGPEPWGSTEHGVE
VVLAHLEAARTVAHHGGLYHTNAEVKLQGFQARPELLEVFSTEFQMRLLWGSQGASSSQARRYEKFDKVL
TALSHKLEPAVRSSEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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