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Report for CCDS65179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65179.1 Public Homo sapiens 9 REXO4 24 110 108 CCDS HistoryNCBI Gene:57109Re-query CCDS DB by CCDS ID:65179.1Re-query CCDS DB by GeneID:57109See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 65179.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371935.6 ENSP00000361003.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371935.6Link to Ensembl Protein Viewer:ENSP00000361003.2Re-query CCDS DB by Nucleotide ID:ENST00000371935Re-query CCDS DB by Protein ID:ENSP00000361003
Original member Current member NCBI NM_001279349.2 NP_001266278.1 Accepted alive Link to Nucleotide Sequence:NM_001279349.2Link to Protein Sequence:NP_001266278.1Re-query CCDS DB by Nucleotide ID:NM_001279349Re-query CCDS DB by Protein ID:NP_001266278Link to BLAST:NP_001266278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001266278.1 250 Q9GZR2-2 250 100% 0 0

Chromosomal Locations for CCDS 65179.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133406953 133407072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133407807 133407881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133408768 133408842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133410985 133411073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133414665 133414833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133417620 133417844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGGGAAGGCGAAGGTCCCCGCCTCCAAGCGCGCCCCGAGCAGCCCCGTGGCTAAGCCGGGTCCTGTCA
AGACGCTCACTCGGAAGAAAAACAAGAAGAAAAAAAGGTTTTGGAAAAGCAAGGCGCGGGAAGTAAGCAA
GAAGCCAGCAAGCGGCCCCGGTGCTGTGGTGCGACCTCCAAAGGCACCAGAAGACTTTTCTCAAAACTGG
AAGGCGCTGCAAGAGGTTCCAAGATGGACAGGAGGGCGCCAGTACCTCGCACCAAGGCCAGTGGAACAGA
GCACAATAAGAAAGGAACCAAGGAAAGGACAAATGGTGATATTGTTCCAGAACGAGGGGACATCGAGCAT
AAGAAGCGGAAAGCTAAGGAGGCAGCCCCAGCCCCACCCACCGAGAGAAGAGCTTGAAGTTGTTCAGAAG
GAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAGGTACTAT
TTCTTGATCATCCAAAAAAGAAGATTCGGGACACACAGAAATATAAACCTTTCAAGAGTCAAGTAAAGAG
TGGAAGGCCGTCTCTGAGACTACTTTCAGAGAAGATCCTTGGGCTCCAGGTCCAGCAGGCGGAGCACTGT
TCAATTCAGGATGCCCAGGCAGCAATGAGGCTGTACGTCATGGTGAAGAAGGAGTGGGAGAGCATGGCCC
GAGACAGGCGCCCCCTGCTGACTGCTCCAGACCACTGCAGTGACGACGCCTAG

Translation (250 aa):
MGKAKVPASKRAPSSPVAKPGPVKTLTRKKNKKKKRFWKSKAREVSKKPASGPGAVVRPPKAPEDFSQNW
KALQEVPRWTGGRQYLAPRPVEQSTIRKEPRKGQMVILFQNEGTSSIRSGKLRRQPQPHPPREELEVVQK
EVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRPSLRLLSEKILGLQVQQAEHC
SIQDAQAAMRLYVMVKKEWESMARDRRPLLTAPDHCSDDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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