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Report for CCDS39053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39053.1 Public Mus musculus 5 Gtf3c2 23 108 98 CCDS HistoryNCBI Gene:71752Re-query CCDS DB by CCDS ID:39053.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088010.11 ENSMUSP00000085325.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088010.11Link to Ensembl Protein Viewer:ENSMUSP00000085325.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088010Re-query CCDS DB by Protein ID:ENSMUSP00000085325
Original member Current member NCBI NM_027901.2 NP_082177.2 Accepted alive Link to Nucleotide Sequence:NM_027901.2Link to Protein Sequence:NP_082177.2Re-query CCDS DB by Nucleotide ID:NM_027901Re-query CCDS DB by Protein ID:NP_082177Link to BLAST:NP_082177.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082177.2 907 Q8BL74 907 100% 0 0

Chromosomal Locations for CCDS 39053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31157549 31157767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31158143 31158250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31158343 31158495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31159061 31159189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31159434 31159521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31159700 31159861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31159948 31160092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31165886 31166015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31166361 31166386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31167696 31167804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31167989 31168100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31168251 31168478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31169051 31169149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31169836 31169913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31170180 31170274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31172782 31173061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31173768 31174089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31174232 31174472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2724 nt):
ATGGATACCTGCGGGGTCGGCTATGTTGCCCTGGGGGAGGCCGACCCCGTGGGGAGCATGATTGTGGTAG
ACTCTCCTGGACAAGAAGAACTAAGCCAGCTGGATGTCAAGGCCTCAGAAACGTCCGGTGTGGAGGCTTC
CATCGAGATGTCACTACCTCCTCCTTTGCCTGGATTTGAGGATTCTTCTGACAGGAGGCTTCCTCCAGAT
CAGGAAAGCCTCACCAGGTTGGAACAGCAAGATCTTTCTTCAGAGATGTCAAAGGTCTCAAACACTAGGG
CCTCAAAGCCTTCCGGGAGGAGAGGTGGTAGGACAGCAAGAGGCGCTAAAAGGCCTCAGCAACGTAAACC
TCCATCTACCCCTCTGGTTCCTGGTCTCTTAGATCAGTCCAACCCTCTGTCCACCCCCATGCCTAAGAAA
CGAAGTCAAAAGTCCAAGGGAGACCTGCTACTATTGAAGTTGTCCAAAGGCCTAGATCAGCCAGAGTCTC
CACATCCAAAGAGGCCCCCCGAGGACTTTGAGACCCCTTCTGGGGAACGACCCCGCCGAAGGGCTGCCCA
AGTGGCACTTCTATACCTTCAGGAACTAGCTGAAGAGCTCTCCACAGCCCTGCCTGCACCGCCACTGTCT
GGTCCTAAGAGTCCCAAGGTGAGCAGCCCCACGAAGCCGAAGAAGACCCGGCAAGCATCCTCTCAGGGTG
AAGAAGACGGAAGCGCTCGGGATGAAGACTTTGTTCTCCAGGTCGAGGGTGAAGATGAGGAAGAAAGTGA
GGCCCCAAGTGAGAACTCGTCTGATCCGGAGCCTGTTGCACCCCGAAGCACCCCACGAGGACCTGCTGCA
GGGAAACAGAAACCACATTGCCGGGGCATGGCTCCCAATGGCTTACCCAATTACATCATGGCTCCTGTTT
GGAAGTGCCTCCACCTCACCAAGGACCTCCGAGAACAGCACCATTCATTCTGGGAGTTTGCTGAGTGGAT
TCCGGTAGCCTGGAAGTGGCAGTTGTTATCTGAACTTGAAGCAGCTCCCTACTTGCCCCAGGAGGAGAAG
TCTCCCCTGTTTTCTGTACAAAGGGAAGGGATTCCTGAGGATGGCACAATCTACCGAATAAACAGATTTA
GCTCGATCACAGCACATCCAGAGCGCTGGGATGTGTCCTTCTTCACAGGGGGACCACTCTGGGCTCTGGA
CTGGTGCCCAGTGCCTGAAGGGTCAGCAGCTTCACAGTATGTGGCCCTTTTCTCCAGCCCTGACATGAAT
GAGACACACCCACTGAGCCAACTTCATTCAGGCCCTGGGCTGCTGCAGCTCTGGGGTCTTGGGACATTGC
AGCAAGAAAGCTGTCCTGGCAATAGGGCCCACTTTGTCTATGGGATTGCTTGTGACAGTGGCTGTATCTG
GGACCTCAAGTTCTGCCCCAGTGGGGCATGGGAACATCCAGAAACCCTTCGGAAGGCTCCTCTCCTGCCT
CGCCTGGGTCTCTTGGCTCTGGCCTGCTCAGATGGGAAGGTACTGCTCTTCAGCCTGCCGCATCCTGAGG
CCCTCCTGGCACAGCAGCCTCCAGATGCTATGAAGCCTGCCATCTACAAGGTCCAGTGTTTGGCAACTCT
TCAGGTAGGGTCTGTGCAAGCTTCAGACCCCTCTGAGTGTGGTCAGTGCCTTAGCCTGGCTTGGATGCCT
ACCAGGCCTCACCACCACCTGGCTGCTGGATACTATAATGGCATGGTAGTTTTCTGGAATCTTCCCACTA
ACTCACCCCTCCAAAGGATACGGCTCTCTGATGGCTCCTTAAAGCTCTATCCCTTCCAGTGTTTCCTAGC
CCATGACCAGGCTGTCCGTACAATTCAGTGGTGCAAAGCTAACAGTCATTTCCTGGTGTCTGCGGGGAGT
GACCGGAAAATCAAATTCTGGGATCTTCGACGACCTTATGAACCAATAAACTGTATCAAGCGCTTCTTGA
GTACAGAGCTTTCCTGGCTGCTCCCCTATAATGGTGTCACAGTGGCTCAAGACAACTGTTATGCCTCTTA
CGGGCTCTGTGGAATTCATTACATTGATGCCGGTTACCTCGGTTTTAAGGCCTACTTTACTGCTCCGCGA
AAAGGCACTGTCTGGAGTCTTTCAGGTTCAGACTGGCTTGGGACAGTAGCTGCAGGAGATATATCTGGGG
AGCTCATTGCAGCTATTTTACCTGATATGGCATCAAATCCAATCAATGTCAAGAAACCTGCAGAAAGACG
ATTTCCTATATATAAAGCAGATTTGATACCATACCAGGACAGCCCCGAAGACCAAGACTACTCCTCGACT
TCCTCTGAGACCCCCAATCCTCCCAAAGCAAGAACCTACACTGAAACCATCAACCATCACTACTTGCTCT
TTCAAGATACAGATCTGAGTTCCTTCCACAATCTGCTTCGTAGAGAACCAATGCTTCGCATGCAGGAAGG
AGAGGGACATTCTCAGCTTTGCCTGGACAGGCTGCAACTTGAAGCTATTCACAAGGTACGCTTCAGCCCA
AACCTGGACTCCTATGGATGGCTGGTATCTGGGGGGCAGTCAGGGTTGGTTCGGATCCATTTTGTTCGTG
GACTCACCTCTCCGCTGGCCCACCGTGTACAGCTTGAAAGCCGAGCCAACTTCAATGCTATGTTCCAACC
GTCCTTTCCAACTGAAGGGCCTGGTTTCTCTCCAAGCAGCCATTGCCTTCTCCCCAATCCCTAG

Translation (907 aa):
MDTCGVGYVALGEADPVGSMIVVDSPGQEELSQLDVKASETSGVEASIEMSLPPPLPGFEDSSDRRLPPD
QESLTRLEQQDLSSEMSKVSNTRASKPSGRRGGRTARGAKRPQQRKPPSTPLVPGLLDQSNPLSTPMPKK
RSQKSKGDLLLLKLSKGLDQPESPHPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPPLS
GPKSPKVSSPTKPKKTRQASSQGEEDGSARDEDFVLQVEGEDEEESEAPSENSSDPEPVAPRSTPRGPAA
GKQKPHCRGMAPNGLPNYIMAPVWKCLHLTKDLREQHHSFWEFAEWIPVAWKWQLLSELEAAPYLPQEEK
SPLFSVQREGIPEDGTIYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGSAASQYVALFSSPDMN
ETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDSGCIWDLKFCPSGAWEHPETLRKAPLLP
RLGLLALACSDGKVLLFSLPHPEALLAQQPPDAMKPAIYKVQCLATLQVGSVQASDPSECGQCLSLAWMP
TRPHHHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANSHFLVSAGS
DRKIKFWDLRRPYEPINCIKRFLSTELSWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPR
KGTVWSLSGSDWLGTVAAGDISGELIAAILPDMASNPINVKKPAERRFPIYKADLIPYQDSPEDQDYSST
SSETPNPPKARTYTETINHHYLLFQDTDLSSFHNLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSP
NLDSYGWLVSGGQSGLVRIHFVRGLTSPLAHRVQLESRANFNAMFQPSFPTEGPGFSPSSHCLLPNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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