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Report for CCDS2225.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
2225.1 |
Public |
Homo sapiens |
2 |
CSRNP3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:80034](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:2225.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 2225.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000314499.11 |
ENSP00000318258.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000314499.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000318258.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000314499](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000318258](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000342316.8 |
ENSP00000344042.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000342316.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000344042.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000342316](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000344042](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000651982.1 |
ENSP00000498841.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000651982.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000498841.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000651982](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000498841](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001172173.2 |
NP_001165644.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001172173.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001165644.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001172173](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001165644](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001165644.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_024969.3 |
NP_079245.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_024969.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_079245.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_024969](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_079245](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_079245.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 2225.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1758 nt): ATGAGTGGAATTTTAAAGAGGAAGTTTGAAGAAGTTGACGGCTCCTCACCCTGCTCCTCTGTGAGGGAAT CAGATGATGAAGTTTCCAGCAGTGAAAGTGCTGACAGTGGGGACAGTGTCAATCCATCCACTTCTAGTCA TTTTACCCCTTCCTCCATTCTCAAAAGGGAGAAACGACTGAGGACAAAGAATGTACATTTTAGTTGTGTC ACCGTGTACTACTTCACCAGGAGGCAAGGCTTCACAAGTGTGCCCAGTCAAGGGGGAAGCACCCTGGGGA TGTCCAGCCGCCATAACAGCGTGCGCCAGTACACTCTTGGCGAGTTTGCAAGGGAGCAGGAGAGGCTCCA CCGGGAGATGTTGAGAGAACACCTTAGGGAGGAAAAGCTGAACTCCTTAAAACTAAAGATGACTAAGAAT GGCACAGTAGAATCAGAAGAAGCCAGCACTCTTACACTGGATGACATTTCTGATGATGACATTGACCTGG ACAACACAGAGGTAGATGAGTACTTCTTCCTACAACCTTTGCCAACAAAAAAACGAAGAGCTCTGCTGCG TGCCTCTGGAGTGAAAAAGATTGACGTGGAAGAAAAGCACGAACTCCGAGCCATCCGCCTCTCACGAGAG GACTGTGGCTGTGACTGCCGAGTGTTCTGTGATCCAGACACGTGCACCTGCAGCCTGGCTGGCATTAAGT GCCAGGTGGATCGTATGTCTTTCCCATGCGGCTGCACTAAAGAAGGATGTAGTAACACAGCAGGTAGAAT TGAATTTAATCCTATCCGTGTTCGGACTCACTTTTTGCACACAATAATGAAACTTGAACTGGAGAAAAAC CGAGAGCAGCAAATCCCCACGCTGAATGGCTGCCACAGTGAGATAAGTGCTCACAGTAGTTCTATGGGCC CTGTCGCTCACTCCGTAGAATATTCAATCGCAGACAGTTTTGAGATTGAAACTGAGCCCCAGGCTGCAGT GCTGCACCTGCAGTCGGCTGAAGAATTAGATTGCCAAGGAGAGGAGGAGGAAGAAGAGGAGGATGGGAGC AGCTTTTGCAGCGGAGTCACAGATTCTAGCACGCAAAGCTTGGCACCTAGTGAGTCAGACGAGGAGGAGG AGGAAGAAGAAGAGGAAGAGGAGGAGGAGGATGACGATGATGACAAAGGAGATGGCTTCGTGGAAGGTTT GGGCACCCATGCCGAAGTTGTCCCTCTTCCTTCAGTTCTTTGTTATTCTGATGGCACCGCCGTTCACGAA AGCCATGCAAAGAATGCTTCTTTTTATGCCAACTCTTCAACTCTGTATTACCAAATAGATAGCCACATTC CAGGAACTCCAAATCAGATCTCTGAGAACTATTCTGAAAGAGACACTGTCAAAAATGGTACCCTTTCGCT GGTGCCTTACACCATGACCCCGGAGCAATTCGTTGACTATGCCCGACAAGCAGAAGAGGCCTATGGTGCC TCCCACTACCCAGCTGCCAACCCCTCTGTAATCGTTTGCTGCTCCTCTTCCGAAAATGATAGCGGTGTGC CCTGCAATAGTTTATATCCTGAACACAGGTCCAATCACCCTCAAGTGGAATTTCACTCATACTTGAAAGG CCCCTCCCAAGAAGGGTTTGTCTCTGCATTGAATGGTGACAGTCACATTTCAGAGCATCCTGCTGAAAAT TCTTTGAGCCTTGCAGAAAAGAGCATATTGCATGAAGAGTGCATCAAATCACCCGTGGTTGAGACAGTCC CTGTTTAG
Translation (585 aa): MSGILKRKFEEVDGSSPCSSVRESDDEVSSSESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCV TVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKN GTVESEEASTLTLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRE DCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKN REQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHLQSAEELDCQGEEEEEEEDGS SFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKGDGFVEGLGTHAEVVPLPSVLCYSDGTAVHE SHAKNASFYANSSTLYYQIDSHIPGTPNQISENYSERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGA SHYPAANPSVIVCCSSSENDSGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAEN SLSLAEKSILHEECIKSPVVETVPV
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