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Report for CCDS80038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80038.1 Public Mus musculus 3 Pdlim5 23 108 98 CCDS HistoryNCBI Gene:56376Re-query CCDS DB by CCDS ID:80038.1Re-query CCDS DB by GeneID:56376See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80038.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000195975.4 ENSMUSP00000142737.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195975.4Link to Ensembl Protein Viewer:ENSMUSP00000142737.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195975Re-query CCDS DB by Protein ID:ENSMUSP00000142737
Original member NCBI NM_001190852.1 NP_001177781.1 Updated not alive Link to Nucleotide Sequence:NM_001190852.1Link to Protein Sequence:NP_001177781.1Re-query CCDS DB by Nucleotide ID:NM_001190852Re-query CCDS DB by Protein ID:NP_001177781
Current member NCBI NM_001190852.2 NP_001177781.1 Accepted alive Link to Nucleotide Sequence:NM_001190852.2Link to Protein Sequence:NP_001177781.1Re-query CCDS DB by Nucleotide ID:NM_001190852Re-query CCDS DB by Protein ID:NP_001177781Link to BLAST:NP_001177781.1

Chromosomal Locations for CCDS 80038.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142242680 142242769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142244896 142245011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142247295 142247415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142249330 142249510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142259130 142259292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142277817 142278001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142281852 142281983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142282969 142283112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142284797 142284916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142303943 142303979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142304297 142304469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142312123 142312214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142314406 142314448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142352734 142352885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142391713 142391808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGAGCAACTACAGTGTGTCATTGGTCGGCCCAGCTCCTTGGGGTTTCCGGCTCCAAGGTGGCAAGGATT
TCAACATGCCTCTGACAATCTCTAGTCTGAAGGATGGTGGCAAGGCATCTCAGGCACATGTCAGAATAGG
GGACGTGGTTCTCAGCATCGATGGGATCAGTGCACAGGGAATGACGCATCTTGAAGCCCAGAACAAGATT
AAGGCTTGTACGGGCTCCTTGAATATGACTCTACAAAGAGCTTCAGCTGCAGCCAAGAGTGAGCCGGTTT
CCGTCCAGAAGCCCACAGTCACCAGCGTGTGTTCCGAGTCTGCTCAGGAGCTAGCAGAGGGACAGAGAAG
AGGATCCCAGGGTGACATTAAGCAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCAACACGGAG
TTTTATCACATACCCACTCACAGTGATGCCAGCAAGAAACGGCTGATTGAGGACACTGAGGACTGGCGCC
CCCGGACTGGAACGACTCAGTCTCGTTCTTTCCGGATCCTTGCCCAGATCACTGGGACTGAGCATCTGAC
AGAATCTGAAAATGACAATACGAAGAAGGCAAAGTTTTACAGTTCTCTGGAAGACCCCCTTAAGAACGGA
CCACACCCACCTGCAGCTCCCCAGCTGTTAAAAGTTCATAGTCAAGTAGCCATAGTTTCTAAGGAAGCAG
CCACTTACTCTAGTGTAAGCAGGTCTACAAGAACTGTAGAAGGTGCTTTGGAAGGCTTTGGAAACTTTCC
TGCCTTCTCCCCTCCTACTAGATACAGTGCTGTAGTCGTCAGTGATGCGGCTGCCACTGTGTCTGCTGCT
CTCGCTGCGAAAACCAGGCTCTTCGGCCCTGAAAACTCCCAGTCTCTTCTGGATGCACTGTGCATCAGCA
CTGTCCCCAAGCCTCTAGCTCTTTCCTGTCTTCAGTCCTCTGAGGAGTCGAGTGGCTCTGTCCACGTTAA
GAAGAGCAGTAGCACCCAGGAGCCTTCTCAGCAACCGGCGTCATCTGGAGCTTCACCTCTGAGCGCGTCT
GAGGGCCCCGAGAGCCCAGGTTCCAGCAGGCCCTCGGTGGCTGGCCTCCGCTCCGCTGCTGCTTTCAAGC
CTGTAGGATCCACCAGCGTCAAGTCACCTAGCTGGCAGCGTCCAAACCAAGCAGCACCTTCTACTGGGAG
AATTTCAAACAATGCACGTTCTTCAGGTACAGGGGCGTCTGTGGGGCCTCCCCAGCCAAGTGACCAAGAC
ACACTTGTGCAGAGAGCGGAACACATTCCAGCGGGCAAGCGGACCCCCATGTGTGCCCACTGCAACCAAG
TTATCAGGGGACCTTTTCTTGTGGCTCTGGGGAAGTCCTGGCATCCAGAAGAATTTAACTGTGCTCATTG
CAAAAACACAATGGCCTACATAGGCTTTGTAGAGGAGAAGGGAGCACTGTACTGTGAGCTATGCTATGAG
AAGTTCTTTGCTCCTGAATGTGGCCGGTGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGCTTTGAAGC
AGACCTGGCATGTGTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCCATTCGTAATAATGTTTTCCACTT
GGAAGATGGCGAGCCCTACTGTGAGACAGACTACTACGCCCTTTTTGGAACAATATGTCGTGGATGTGAA
TTCCCCATAGAGGCTGGTGACATGTTCCTGGAAGCTCTGGGATACACTTGGCATGATACTTGCTTTGTGT
GCTCTGTGTGTTGTGAAAGTTTGGAAGGGCAGACATTTTTCTCCAAGAAGGACAAGCCACTTTGCAAAAA
ACATGCTCATTCTGTGAATTTTTGA

Translation (614 aa):
MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI
KACTGSLNMTLQRASAAAKSEPVSVQKPTVTSVCSESAQELAEGQRRGSQGDIKQQNGPPRKHIVERNTE
FYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLTESENDNTKKAKFYSSLEDPLKNG
PHPPAAPQLLKVHSQVAIVSKEAATYSSVSRSTRTVEGALEGFGNFPAFSPPTRYSAVVVSDAAATVSAA
LAAKTRLFGPENSQSLLDALCISTVPKPLALSCLQSSEESSGSVHVKKSSSTQEPSQQPASSGASPLSAS
EGPESPGSSRPSVAGLRSAAAFKPVGSTSVKSPSWQRPNQAAPSTGRISNNARSSGTGASVGPPQPSDQD
TLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYE
KFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALFGTICRGCE
FPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCKKHAHSVNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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