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Report for CCDS91523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91523.1 Public Homo sapiens 11 SMIM38 24 110 108 CCDS HistoryNCBI Gene:107984345Re-query CCDS DB by CCDS ID:91523.1Re-query CCDS DB by GeneID:107984345See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 91523.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641568.1 ENSP00000493332.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641568.1Link to Ensembl Protein Viewer:ENSP00000493332.1Re-query CCDS DB by Nucleotide ID:ENST00000641568Re-query CCDS DB by Protein ID:ENSP00000493332
Original member Current member EBI ENST00000686937.1 ENSP00000509659.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686937.1Link to Ensembl Protein Viewer:ENSP00000509659.1Re-query CCDS DB by Nucleotide ID:ENST00000686937Re-query CCDS DB by Protein ID:ENSP00000509659
Original member Current member EBI ENST00000686237.1 ENSP00000509996.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000686237.1Link to Ensembl Protein Viewer:ENSP00000509996.1Re-query CCDS DB by Nucleotide ID:ENST00000686237Re-query CCDS DB by Protein ID:ENSP00000509996
Original member Current member NCBI NM_001369201.2 NP_001356130.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369201.2Link to Protein Sequence:NP_001356130.1Re-query CCDS DB by Nucleotide ID:NM_001369201Re-query CCDS DB by Protein ID:NP_001356130Link to BLAST:NP_001356130.1
Original member Current member NCBI NM_001394169.1 NP_001381098.1 Accepted alive Link to Nucleotide Sequence:NM_001394169.1Link to Protein Sequence:NP_001381098.1Re-query CCDS DB by Nucleotide ID:NM_001394169Re-query CCDS DB by Protein ID:NP_001381098Link to BLAST:NP_001381098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356130.1 51 A0A286YFK9 51 100% 0 0
NP_001381098.1 51 A0A286YFK9 51 100% 0 0

Chromosomal Locations for CCDS 91523.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69157847 69158002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (156 nt):
ATGACCTCCTGGCCAGGTGGCAGCTTTGGCCCTGACCCGCTCCTGGCCCTGCTGGTGGTGATCCTGCTAG
CACGCCTCATCCTGTGGTCCTGCCTCGGGACCTACATCGACTACAGACTGGCCCAGCGGCGGCCCCAGAA
ACCCAAGCAGGACTAA

Translation (51 aa):
MTSWPGGSFGPDPLLALLVVILLARLILWSCLGTYIDYRLAQRRPQKPKQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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