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Report for CCDS891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
891.1 Public Homo sapiens 1 CD101 24 110 108 CCDS HistoryNCBI Gene:9398Re-query CCDS DB by CCDS ID:891.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 891.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256652.8 ENSP00000256652.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000256652.8Link to Ensembl Protein Viewer:ENSP00000256652.4Re-query CCDS DB by Nucleotide ID:ENST00000256652Re-query CCDS DB by Protein ID:ENSP00000256652
Original member Current member EBI ENST00000369470.1 ENSP00000358482.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369470.1Link to Ensembl Protein Viewer:ENSP00000358482.1Re-query CCDS DB by Nucleotide ID:ENST00000369470Re-query CCDS DB by Protein ID:ENSP00000358482
Original member Current member EBI ENST00000682167.1 ENSP00000508039.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682167.1Link to Ensembl Protein Viewer:ENSP00000508039.1Re-query CCDS DB by Nucleotide ID:ENST00000682167Re-query CCDS DB by Protein ID:ENSP00000508039
Original member Current member NCBI NM_001256106.3 NP_001243035.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256106.3Link to Protein Sequence:NP_001243035.1Re-query CCDS DB by Nucleotide ID:NM_001256106Re-query CCDS DB by Protein ID:NP_001243035Link to BLAST:NP_001243035.1
Original member Current member NCBI NM_001256109.3 NP_001243038.1 Accepted alive Link to Nucleotide Sequence:NM_001256109.3Link to Protein Sequence:NP_001243038.1Re-query CCDS DB by Nucleotide ID:NM_001256109Re-query CCDS DB by Protein ID:NP_001243038Link to BLAST:NP_001243038.1
Original member Current member NCBI NM_004258.6 NP_004249.2 Accepted alive Link to Nucleotide Sequence:NM_004258.6Link to Protein Sequence:NP_004249.2Re-query CCDS DB by Nucleotide ID:NM_004258Re-query CCDS DB by Protein ID:NP_004249Link to BLAST:NP_004249.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243035.1 1021 Q93033 1021 100% 0 0
NP_001243038.1 1021 Q93033 1021 100% 0 0
NP_004249.2 1021 Q93033 1021 100% 0 0

Chromosomal Locations for CCDS 891.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 117001818 117001860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117009850 117010230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117011550 117011966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117013406 117013792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117017090 117017473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117018156 117018560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117021573 117021983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117025509 117025904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117033860 117034101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3066 nt):
ATGGCAGGCATCTCATATGTGGCATCTTTCTTTCTCCTTCTGACTAAGCTCAGCATTGGCCAGAGAGAAG
TA
ACAGTTCAGAAAGGACCACTGTTTAGAGCTGAAGGTTACCCAGTCAGCATTGGCTGCAATGTAACTGG
C
CACCAGGGACCTTCTGAGCAGCATTTCCAGTGGTCTGTTTACCTGCCGACAAACCCGACCCAGGAAGTC
CAG
ATCATTAGCACCAAGGATGCTGCCTTCTCTTACGCAGTATATACGCAGCGGGTGCGAAGCGGAGACG
TC
TACGTGGAGAGGGTCCAGGGCAACTCAGTCTTGTTGCACATCTCAAAACTCCAGATGAAGGATGCTGG
C
GAGTATGAGTGTCACACACCAAACACTGATGAGAAATACTATGGAAGTTACAGTGCAAAGACTAATCTA
ATT
GTTATTCCAGATACCCTCTCTGCCACCATGAGTTCTCAGACTCTCGGTAAGGAGGAAGGTGAGCCAT
TA
GCCCTCACCTGTGAGGCATCCAAAGCCACAGCCCAACATACTCACCTCTCTGTCACCTGGTACCTAAC
A
CAGGATGGAGGAGGAAGCCAAGCCACTGAGATTATTTCTCTCTCCAAAGATTTTATATTGGTCCCTGGG
CCC
TTGTATACAGAGCGGTTTGCAGCCAGTGACGTACAGCTCAACAAACTGGGACCCACTACATTCAGGC
TG
TCCATAGAGAGGCTCCAGTCCTCAGATCAGGGTCAGCTGTTCTGTGAGGCAACGGAATGGATTCAGGA
T
CCAGATGAAACTTGGATGTTCATCACCAAAAAGCAGACCGATCAAACCACTCTGAGGATCCAGCCAGCA
G
TG
AAAGATTTTCAAGTCAACATTACAGCTGACAGCTTGTTTGCTGAAGGGAAACCCTTAGAACTGGTTT
GC
CTGGTTGTAAGCAGTGGCCGTGACCCACAGCTTCAAGGCATTTGGTTCTTCAATGGGACTGAAATTGC
T
CACATTGATGCTGGTGGAGTCCTGGGCCTGAAGAATGACTACAAAGAGAGAGCAAGTCAAGGAGAGCTC
CAG
GTTTCAAAGTTAGGCCCCAAGGCTTTCTCTCTCAAGATCTTCTCTCTGGGCCCAGAGGATGAAGGCG
CC
TACAGATGTGTGGTAGCAGAGGTCATGAAAACACGCACAGGTTCCTGGCAGGTGCTTCAGAGAAAGCA
G
TCACCAGACAGCCACGTGCACCTGAGGAAGCCAGCAGCAAGAAGTGTGGTCATGTCTACCAAGAACAAG
CAG
CAAGTTGTGTGGGAAGGAGAGACACTCGCCTTTCTCTGTAAGGCTGGTGGAGCTGAAAGTCCCCTGT
CT
GTGAGCTGGTGGCACATCCCACGGGACCAGACACAGCCCGAGTTTGTGGCTGGCATGGGGCAGGATGG
C
ATTGTGCAGCTGGGTGCCTCCTATGGGGTACCCAGTTACCATGGCAACACAAGGCTGGAGAAAATGGAC
TGG
GCCACCTTCCAGCTGGAGATCACCTTCACTGCCATCACAGACAGTGGCACATATGAGTGCAGAGTAT
CT
GAGAAGTCTCGGAACCAGGCCAGAGATCTGAGCTGGACTCAGAAGATTTCAGTTACTGTAAAGTCTCT
G
GAGTCAAGTTTACAAGTTAGTCTGATGAGCCGTCAGCCGCAAGTGATGTTAACCAACACCTTTGACCTG
TCC
TGTGTCGTGAGGGCCGGTTACTCTGACCTCAAGGTGCCACTCACTGTGACGTGGCAGTTCCAGCCAG
CT
AGCTCTCACATCTTCCACCAGCTTATTCGAATCACCCACAATGGCACTATTGAATGGGGGAATTTCCT
A
TCCCGGTTCCAAAAGAAGACGAAAGTGTCGCAGTCTTTATTTCGTTCACAACTCCTAGTCCATGATGCC
ACT
GAGGAAGAGACAGGAGTGTATCAGTGTGAAGTAGAAGTTTATGACAGAAATTCCCTATACAACAACC
GC
CCCCCGAGGGCTTCTGCCATCTCTCACCCACTGAGGATAGCCGTCACTTTACCAGAGAGCAAGCTAAA
A
GTGAATTCAAGGAGTCAAGTCCAAGAGCTCTCCATCAACTCCAACACTGATATAGAATGTAGCATCTTG
TCC
CGGTCCAATGGAAACCTTCAGTTAGCCATTATTTGGTATTTTTCTCCTGTTTCCACTAATGCCTCTT
GG
CTAAAGATCCTGGAGATGGACCAAACCAATGTTATAAAAACTGGGGATGAGTTTCACACCCCACAGAG
A
AAACAAAAATTTCATACTGAGAAGGTTTCCCAAGACTTATTTCAGCTGCACATTCTGAATGTGGAAGAC
AGC
GATCGGGGCAAATATCACTGTGCTGTGGAGGAATGGCTCCTGTCTACAAATGGCACTTGGCACAAGC
TT
GGAGAAAAGAAGTCAGGACTAACAGAATTGAAACTCAAGCCCACAGGAAGTAAGGTACGTGTCTCCAA
A
GTGTACTGGACCGAAAATGTGACTGAGCACAGAGAAGTGGCCATCCGCTGCAGCCTGGAGAGTGTAGGC
AGC
TCAGCCACTCTGTACTCTGTGATGTGGTACTGGAACAGAGAAAACTCTGGAAGTAAATTGCTGGTGC
AC
TTGCAACATGATGGCTTGCTGGAGTATGGGGAAGAGGGGCTCAGGAGGCACCTGCACTGTTACCGTTC
A
TCCTCTACAGACTTTGTCCTGAAGCTTCATCAGGTGGAGATGGAGGATGCAGGAATGTACTGGTGTAGG
GTG
GCAGAGTGGCAGCTCCATGGACACCCAAGCAAGTGGATTAATCAAGCATCCGATGAGTCACAGCGGA
TG
GTGCTCACGGTGCTGCCTTCAGAGCCCACGCTTCCTTCCAGGATCTGCTCCTCGGCCCCTTTACTCTA
T
TTCCTGTTCATCTGTCCCTTCGTCCTGCTCCTCCTTCTGCTCATCTCCCTCCTCTGCTTATACTGGAAG
GCC
AGGAAGTTGTCAACACTGCGTTCCAACACACGGAAAGAAAAAGCTCTCTGGGTGGACTTGAAAGAGG
CT
GGAGGTGTGACCACAAATAGGAGGGAAGACGAGGAGGAAGATGAAGGCAACTGA


Translation (1021 aa):
MAGISYVASFFLLLTKLSIGQREVTVQKGPLFRAEGYPVSIGCNVTGHQGPSEQHFQWSVYLPTNPTQEV
Q
IISTKDAAFSYAVYTQRVRSGDVYVERVQGNSVLLHISKLQMKDAGEYECHTPNTDEKYYGSYSAKTNL
I
VIPDTLSATMSSQTLGKEEGEPLALTCEASKATAQHTHLSVTWYLTQDGGGSQATEIISLSKDFILVPG
P
LYTERFAASDVQLNKLGPTTFRLSIERLQSSDQGQLFCEATEWIQDPDETWMFITKKQTDQTTLRIQPA

V
KDFQVNITADSLFAEGKPLELVCLVVSSGRDPQLQGIWFFNGTEIAHIDAGGVLGLKNDYKERASQGEL
Q
VSKLGPKAFSLKIFSLGPEDEGAYRCVVAEVMKTRTGSWQVLQRKQSPDSHVHLRKPA
ARSVVMSTKNK
Q
QVVWEGETLAFLCKAGGAESPLSVSWWHIPRDQTQPEFVAGMGQDGIVQLGASYGVPSYHGNTRLEKMD
W
ATFQLEITFTAITDSGTYECRVSEKSRNQARDLSWTQKISVTVKSL
ESSLQVSLMSRQPQVMLTNTFDL
S
CVVRAGYSDLKVPLTVTWQFQPASSHIFHQLIRITHNGTIEWGNFLSRFQKKTKVSQSLFRSQLLVHDA
T
EEETGVYQCEVEVYDRNSLYNNRPPRASAISHPLRIAVTLP
ESKLKVNSRSQVQELSINSNTDIECSIL
S
RSNGNLQLAIIWYFSPVSTNASWLKILEMDQTNVIKTGDEFHTPQRKQKFHTEKVSQDLFQLHILNVED
S
DRGKYHCAVEEWLLSTNGTWHKLGEKKSGLTELKLKPT
GSKVRVSKVYWTENVTEHREVAIRCSLESVG
S
SATLYSVMWYWNRENSGSKLLVHLQHDGLLEYGEEGLRRHLHCYRSSSTDFVLKLHQVEMEDAGMYWCR
V
AEWQLHGHPSKWINQASDESQRMVLTVLPS
EPTLPSRICSSAPLLYFLFICPFVLLLLLLISLLCLYWK
A
RKLSTLRSNTRKEKALWVDLKEAGGVTTNRREDEEEDEGN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser