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Report for CCDS59497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59497.1 Public Homo sapiens 6 POM121L2 24 110 108 CCDS HistoryNCBI Gene:94026Re-query CCDS DB by CCDS ID:59497.1See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 59497.1
This CCDS representation lacks full-length human transcript support and it is therefore inferred, but it is supported by several partial human transcripts including CR748811.1, HY022779.1, HY202236.1 and HY206240.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59497.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444565.2 ENSP00000392726.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444565.2Link to Ensembl Protein Viewer:ENSP00000392726.1Re-query CCDS DB by Nucleotide ID:ENST00000444565Re-query CCDS DB by Protein ID:ENSP00000392726
Original member Current member NCBI NM_033482.4 NP_258443.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033482.4Link to Protein Sequence:NP_258443.2Re-query CCDS DB by Nucleotide ID:NM_033482Re-query CCDS DB by Protein ID:NP_258443Link to BLAST:NP_258443.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_258443.2 1035 Q96KW2 1035 100% 0 0

Chromosomal Locations for CCDS 59497.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 27309063 27312170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3108 nt):
ATGGGCAGTTTCCTGAGCAAACTGGAACTTTCGCCCTCGTCCCCAGCCCAGGTGCGCACCGACTTGCCCG
AGAGGCCCACGAAACGCCGGCCACCTCAGCCCCTTCACCAAGTTCATCGGGTTCAGTTCGTCCACCGCGC
CCACCCTGCCCCACGGTATAGACCTGTGAGGAGGCGGCCAAACCTGGATCCTGCCAATCCAACCACGTGG
CTGGCCAACGAGGCCTGGAGGCGCTTTCCCATGAAGAAGTCCCAGAATTCCCCCCTGGGGCCTCTCCCTT
CAGACTGGTGGGAAAGTTACTTAAAGCGGACTATTTGGTCTCTTCGACATCCCAGGCCAATTTGGAGCCC
AGTGACCATCAGGATCACTCCTCCTGACCAGAGAGTGCCCCCTTCCACTTCTCCTGAAGATGTAATTGCC
CTTGCAGGACTCCCGCCCTCTGAGGAGCTCGCAGATCCATGTTCAAAGGAGACAGTGTTGAGGGCCCTCA
GAGAGTGCAGAAAAGGGAAAGGGAGGTTGGAAGAACCACTATTCCCTGAGAGTCTGGACAGTAAGAGAAG
GAGTCCAGAGACCAGACCATCGGCATTTAAGCCCCTGATGAAAAATGGAACCCTCACTTCTTTTGTGCCC
AGGCCTGGGCCGCTGAAGAGAAGTCTCCACTCCTGGGGCTCAGATCACAGCTTGACTAAGAGGCCCAATT
GCTCCTCCATGAGCTCCTTGGCCAGCATATACAGAGGTGGCACCCTCAGCTCCAAAAGGAATGCTATTGG
CAGCTCTTACAGCTCTTGCAGAAATTTCTCAGACCCTTGGAAGAGAAGTGTTCCCAGTGTATCATTCGAG
ACACCAGAGTGGCCAATAAAAAAGGAAAAAAGTTGTCATCGGCCTTCCTCTCCAGTCCCACTGGTATCAG
ATTTTGAGTCCCTAGGAGGATCTGAAAGTTCTGGGCAGCAAAACCAGAAGATTCCACAGCTGCCGTCTAG
CCCTGAGAACCTGGTGTCAGAGATCCCACCTCCCCAGCTTGGTTATGCAGTCTCTGATGAGAACTTGACT
TTGGGGAAGAAAGCTGAGCTACAGGTAAGCAACAACGCAGGAGAAGATACAACTGAGGTCAACACAGACC
CTTTCCCTGAGACTTGGCTTGCTATTCAGCCTTCCTTGTCTCTTGCTCTGCCTTCTTCAGAAACAGATCT
AACCCAGGGAGCAAATCCTCAGTTGGAAAACTTAAGAAAAATGCAGAAGTCTCTAGGTCCACTGGCCTCT
CCACAGTCCACGGGAGAGGCAACCAGTGTGGCCCATTCTCCTTTGAAGACACCCAGCCTACCGACCCCAC
CTGGGTGCTCACAGTCAGAGCTCCTTCCAGGCACCTCTCCAGACTCAAAGCCCACAGCTACTTTCATCCT
GCTGACCCCCACCTCTCCCACATTACCAGTTACTGACACCACCTGGCCGCCTTCAACCTCTCAGGCTGAC
AGGTCTCCCATGCCCCCAGACCCACCTGCACCACCCACCATCCAAAGTACTTTGCTTGGAATGGTGAGTA
GCCCAACATCCCATCTTTCTGCATCTGCACCTCCTGATGCAACTTCTGCTCACCTCATGTTAAAACCGAT
TTTGGGGCCCCTGCACAACAGCGAGATTGGAAGCTCCTCATATTCCAGAATTTCAGTCACAGCTGCAGCA
TCTTCAATCTCTTCCCTTTCCACAATTCAGGGTACCTTAACTCCTACCTTCAAGCCTATCTTTGGCAGCA
TAGATCCACTTAAAACTACGCCCATGATAGCTCCTTTCTCCTCCAAGCAGACCCCTCCTCCATTTACTCA
TGCTTCTACCCATCATTTCCATGGCCTGGTCAAGGCCACCTCTGTGGTCATGTCCACCACCCTAGCCAGC
ACATCTAAAGACTCTGTTTTTAAGCCACCTTTGGATTTTGGTGTAGTGAATGTCACCAGTGCCGTAGGCA
ACACTTATTCTGTCCCTTCCACTTGCGACACTTTCCTGCTTGGGACTGCTCAGGCCTTCAGGGCCGACTT
CACCCCAGCCACAGGATTCATTTTCCCACCACACCACCATCCTACAATTCCTACTGTGCATACAGTCACC
ATGTTTACCCAGGTCCTTTCCAGTGTTGTACAGATATCCCCTAGAAGCAGCACTGCTAATTTCAGGGGTA
TGGGCAGCCCTCTGCCTGCCTCTGCCCTAGTATCCACAAACTGGCTTGCATCAACCCCCAGCATCTCCAA
CCTGACTCCAGCAATCACAAGTCCCTTGGGATCAAGCTCAAGGCCACCTTTCCCACTATCCCAAGGAGCT
AATCCCCAGCCTGCATTTGGTGCCACAAATGGACAGAAACAAGGGCCTTCCCAGCCAGCCCTTATGCCAA
GTGTCAGTAGTTCTTTTCTTTTTGGGAGCTCAGCAGTGGCATTGCCAACCCCCATGCCAACTCCAGCTCA
GCCAGCCTTCATTAGTACCACACAGTCAGCCTTGGGGTGTTTGACACCCTCAGCCTCCACCTCTCAAACC
CCTGCCAGCACCTGGTCAGGCATTGGCGGCATTCCAGCAGGTTTTCCCATTAGTCAAGCTAGTACAACTG
GGTTTAGAATTGTAATTCAGACCCACCAAAGTGGGGCTTTTGGCTCAGTGTTTGGCAGCAGAGCTCCACA
ACCTTTCACTTTTGGGGGATTCGTGACCCCTATGGACTGTGATGAGTCTGGGATCATAATGACTGGTCCA
GACATGAGCCCCACCTCTGGAGCTTTCAGCATTGGAGCATTGCCTAGTGGGACCACTAACACCATGATCC
CCTTTGGAAAAGGCTGGAGCCAGAACACTGAAGGCCTGCCCAGCCACCGCACAGCTTTTTCCTTGGGGAG
AGGCAGCATTTCTGCAAGAAAGACTATGGCCCCCATTGCTCAAAACACCCCAGTCCCTGGACAAGCTAAG
GCAGGCAGCAGTGTTGGCTTTGGGATGCCTTTTCCACCTGCCCAGGGCTCTGTTGGGAGAGGACCTTTTA
GATCATCAGCCTCTTCATTTTCCATTGGCGCAAAATCAAAAACCCCAAAGAATCGGGAGAAAGGGCATTC
CCGAAGGCATCATGCCTACAAGAAGTAG

Translation (1035 aa):
MGSFLSKLELSPSSPAQVRTDLPERPTKRRPPQPLHQVHRVQFVHRAHPAPRYRPVRRRPNLDPANPTTW
LANEAWRRFPMKKSQNSPLGPLPSDWWESYLKRTIWSLRHPRPIWSPVTIRITPPDQRVPPSTSPEDVIA
LAGLPPSEELADPCSKETVLRALRECRKGKGRLEEPLFPESLDSKRRSPETRPSAFKPLMKNGTLTSFVP
RPGPLKRSLHSWGSDHSLTKRPNCSSMSSLASIYRGGTLSSKRNAIGSSYSSCRNFSDPWKRSVPSVSFE
TPEWPIKKEKSCHRPSSPVPLVSDFESLGGSESSGQQNQKIPQLPSSPENLVSEIPPPQLGYAVSDENLT
LGKKAELQVSNNAGEDTTEVNTDPFPETWLAIQPSLSLALPSSETDLTQGANPQLENLRKMQKSLGPLAS
PQSTGEATSVAHSPLKTPSLPTPPGCSQSELLPGTSPDSKPTATFILLTPTSPTLPVTDTTWPPSTSQAD
RSPMPPDPPAPPTIQSTLLGMVSSPTSHLSASAPPDATSAHLMLKPILGPLHNSEIGSSSYSRISVTAAA
SSISSLSTIQGTLTPTFKPIFGSIDPLKTTPMIAPFSSKQTPPPFTHASTHHFHGLVKATSVVMSTTLAS
TSKDSVFKPPLDFGVVNVTSAVGNTYSVPSTCDTFLLGTAQAFRADFTPATGFIFPPHHHPTIPTVHTVT
MFTQVLSSVVQISPRSSTANFRGMGSPLPASALVSTNWLASTPSISNLTPAITSPLGSSSRPPFPLSQGA
NPQPAFGATNGQKQGPSQPALMPSVSSSFLFGSSAVALPTPMPTPAQPAFISTTQSALGCLTPSASTSQT
PASTWSGIGGIPAGFPISQASTTGFRIVIQTHQSGAFGSVFGSRAPQPFTFGGFVTPMDCDESGIIMTGP
DMSPTSGAFSIGALPSGTTNTMIPFGKGWSQNTEGLPSHRTAFSLGRGSISARKTMAPIAQNTPVPGQAK
AGSSVGFGMPFPPAQGSVGRGPFRSSASSFSIGAKSKTPKNREKGHSRRHHAYKK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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