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Report for CCDS14789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14789.1 Public Homo sapiens Y CDY2A 24 110 108 CCDS HistoryNCBI Gene:9426Re-query CCDS DB by CCDS ID:14789.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250838.6 ENSP00000250838.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250838.6Link to Ensembl Protein Viewer:ENSP00000250838.4Re-query CCDS DB by Nucleotide ID:ENST00000250838Re-query CCDS DB by Protein ID:ENSP00000250838
Original member Current member NCBI NM_004825.2 NP_004816.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004825.2Link to Protein Sequence:NP_004816.1Re-query CCDS DB by Nucleotide ID:NM_004825Re-query CCDS DB by Protein ID:NP_004816Link to BLAST:NP_004816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004816.1 541 Q9Y6F7 541 100% 0 0

Chromosomal Locations for CCDS 14789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 18026115 18027740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGT
ATTTGGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTG
TGAAAAATGTGTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATGGACTACAACC
AGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTAAGAACT
CTCCTAAAACTCCAGTGACTGATAAACACCACAGGTCCAAAAACTGCAAGTTATTTGCTGCCAGCAAGAA
CGTTAGGAGAAAGGCAGCTTCAACTCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAG
ACCCTTGCACCTGACAGCCCCTTTGACCACAAGAAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGG
ACCCTATTGCAGCAGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCCGGGACCC
TTTGTCACATCCTGGTGCAGAACAGACTGGAATACAGAACAAGACTCAGATGCACCCACTAATGTCGCAG
ATGTCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAG
ACCCATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAA
TATTACTGATGACAGCAGAGGCCAGCCTTTTATCAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGT
GCCATCACATACAGAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCAACTAGAT
CGACAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAATGGTTAATGCTCTGAATAGCGCTGCTGC
AGATGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTAC
TTTGTGAGGCACTTAAGGAATGACAGAAACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTG
TGAATACTTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCCATTGGACTAGGTGC
ATCCATCCTGCCTCTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTATACGACC
TTTGGACAGAGTCCAGATGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCAATG
AAATGTTAATTGCTGGGCGAAAGCTGACAGCACGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATT
TTTGACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCTCATACAATGCAATTGTA
CTGGAAGAATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGT
GTGAGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAGTATGTTGAAAATAA
AATTGATGAGTTTTAA

Translation (541 aa):
MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQKKLTWTTT
SRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAASTLSDTKNMEIINSTIE
TLAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQ
MSGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTES
AITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGY
FVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTT
FGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIV
LEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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