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Report for CCDS30571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30571.1 Public Homo sapiens 1 CEP104 24 110 108 CCDS HistoryNCBI Gene:9731Re-query CCDS DB by CCDS ID:30571.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378230.8 ENSP00000367476.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378230.8Link to Ensembl Protein Viewer:ENSP00000367476.3Re-query CCDS DB by Nucleotide ID:ENST00000378230Re-query CCDS DB by Protein ID:ENSP00000367476
Original member Current member EBI ENST00000674623.1 ENSP00000501733.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674623.1Link to Ensembl Protein Viewer:ENSP00000501733.1Re-query CCDS DB by Nucleotide ID:ENST00000674623Re-query CCDS DB by Protein ID:ENSP00000501733
Original member Current member EBI ENST00000674558.1 ENSP00000501829.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674558.1Link to Ensembl Protein Viewer:ENSP00000501829.1Re-query CCDS DB by Nucleotide ID:ENST00000674558Re-query CCDS DB by Protein ID:ENSP00000501829
Original member Current member NCBI NM_014704.4 NP_055519.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014704.4Link to Protein Sequence:NP_055519.1Re-query CCDS DB by Nucleotide ID:NM_014704Re-query CCDS DB by Protein ID:NP_055519Link to BLAST:NP_055519.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055519.1 925 O60308-1 925 100% 0 0

Chromosomal Locations for CCDS 30571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 3815402 3815517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3816280 3816370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3823174 3823241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3823424 3823562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3825758 3825866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3826370 3826436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3826708 3826744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3829266 3829373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3829791 3829997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3831046 3831222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3833862 3834035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3834925 3835092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3836495 3836692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3837292 3837519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3838964 3839119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3839608 3839776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3844907 3844983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3845289 3845351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3847475 3847613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3848608 3848781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3852295 3852407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGCCCCACAAGATTGGATTTGTAGTCGTCAGCTCATCTGGACACGAAGACGGCTTCAGTGCCCGGGAGC
TCATGATCCACGCGCCAACTGTCAGTGGGTGGCGGTCACCTAGATTTTGCCAGTTTCCACAAGAAATTGT
CCTTCAAATGGTGGAGAGATGTCGAATAAGGAAACTGCAGTTACTTGCTCACCAGTATATGATTTCAAGT
AAAATTGAGTTCTACATTAGTGAAAGCTTGCCTGAATATTTTGCACCCTATCAAGCAGAGCGGTTTCGAA
GACTTGGCTACGTGTCTCTCTGTGATAATGAAAAGACAGGTTGCAAAGCCCGGGAACTAAAATCAGTTTA
TGTGGATGCAGTAGGACAATTTCTTAAACTGATTTTTCACCAAAACCATGTCAACAAATACAACATATAT
AATCAGGTTGCTTTGGTTGCCATAAATATCATTGGAGACCCTGCAGATTTCAGTGATGAAAGCAATACTG
CCTCTCGAGAGAAGTTGATTGACCACTACCTTGGGCACAACAGCGAGGACCCTGCTCTAGAAGGAACGTA
CGCCAGGAAATCTGACTATATCTCTCCGCTAGATGACTTAGCTTTTGATATGTACCAAGATCCAGAAGTT
GCACAGATCATACGAAAATTAGATGAAAGAAAACGGGAAGCTGTCCAAAAGGAACGCTATGATTATGCCA
AGAAACTAAAACAAGCCATTGCTGATTTGCAAAAGGTTGGTGAACGCCTTGGGAGGTATGAGGTAGAGAA
ACGCTGTGCCGTGGAGAAGGAAGACTACGATCTCGCCAAGGAGAAGAAGCAGCAGATGGAGCAGTATCGT
GCCGAGGTGTACGAGCAGCTGGAGCTGCACAGCCTCCTGGATGCCGAGCTGATGCGAAGACCTTTTGATT
TGCCCCTCCAGCCCCTCGCTCGTTCTGGCAGTCCTTGCCACCAAAAGCCAATGCCCTCACTACCACAACT
GGAAGAAAGAGGAACAGAAAACCAGTTTGCAGAACCTTTCCTTCAGGAAAAGCCTTCATCATATTCTCTA
ACTATTTCTCCTCAGCATTCTGCAGTAGACCCGTTACTCCCTGCCACAGATCCTCATCCAAAGATCAATG
CAGAGTCCCTGCCCTACGATGAGCGGCCTCTTCCAGCTATTCGTAAGCATTATGGGGAGGCAGTGGTGGA
GCCGGAAATGAGTAATGCAGACATCAGCGATGCTCGGAGGGGAGGCATGTTAGGGGAGCCAGAGCCCTTA
ACCGAGAAGGCCTTGAGAGAAGCCAGCTCTGCCATCGATGTGTTGGGAGAAACCTTGGTTGCTGAGGCCT
ATTGTAAGACGTGGTCCTACCGAGAGGATGCACTGCTTGCCTTGTCTAAGAAGTTAATGGAAATGCCTGT
TGGAACCCCAAAAGAAGATTTAAAGAACACACTGAGAGCATCCGTCTTTCTCGTTAGAAGAGCCATAAAG
GACATTGTGACCTCCGTTTTTCAGGCTTCTTTGAAATTGTTGAAAATGATCATTACACAATATATTCCTA
AACATAAACTGAGTAAACTTGAAACAGCTCACTGTGTGGAGAGGACCATTCCCGTTTTGCTCACCAGAAC
TGGAGATTCTTCTGCCCGCCTCCGCGTCACAGCTGCAAATTTTATTCAGGAAATGGCCTTGTTTAAAGAA
GTTAAGTCTCTCCAAATTATTCCATCCTACCTGGTGCAGCCATTGAAAGCAAACTCTTCAGTTCACCTGG
CAATGAGTCAGATGGGCCTCCTGGCCCGGCTGCTGAAAGACCTGGGCACTGGCAGCTCGGGCTTCACCAT
TGACAACGTGATGAAGTTTTCAGTGAGTGCCCTGGAGCATAGAGTGTATGAGGTCCGCGAGACGGCGGTT
CGAATTATTTTGGACATGTACAGACAGCACCAGGCTTCCATCCTGGAGTACCTTCCTCCAGACGACAGCA
ACACACGCAGGAACATTCTCTACAAAACAATTTTTGAGGGATTTGCTAAAATAGATGGCAGAGCTACAGA
TGCTGAGATGAGGGCACGGAGAAAAGCGGCTACAGAAGAAGCAGAAAAACAAAAGAAAGAAGAAATAAAA
GCTTTACAAGGGCAGCTGGCAGCACTGAAAGAAATTCAGGCTGAAGTTCAGGAAAAAGAAAGTGATGCTG
TGAAGCCAAAGAATCAGGACATTCAAGGAGGGAAAGCAGCCCCTGCTGAAGCTCTGGGAATCCCGGATGA
GCACTATCTAGATAATTTGTGTATTTTTTGTGGGGAAAGGAGTGAATCCTTCACAGAGGAAGGTCTGGAT
CTCCACTACTGGAAGCACTGTCTCATGCTGACAAGATGTGACCACTGCAAACAGGTGGTCGAGATATCCA
GTCTGACGGAGCACTTGCTGACGGAATGTGACAAAAAAGACGGGTTTGGAAAGTGTTACCGTTGCAGTGA
GGCTGTTTTCAAGGAAGAGCTGCCCAGACACATAAAACACAAGGATTGCAACCCTGCCAAACCGGAGAAG
CTGGCAAACCGGTGTCCCCTGTGTCATGAGAACTTCAGCCCTGGAGAAGAGGCATGGAAAGCTCACCTGA
TGGGCCCAGCCGGCTGCACGATGAACCTGCGCAAGACACACATTCTGCAGAAGGCCCCGGCACTGCAGCC
AGGGAAAAGCTCAGCTGTGGCCGCATCAGGCCCCTTGGGGTCAAAGGCCGGAAGCAAGATCCCCACCCCG
AAGGGCGGACTGAGCAAGAGCTCCAGCAGGACGTACGCCAAGCGCTGA

Translation (925 aa):
MPHKIGFVVVSSSGHEDGFSARELMIHAPTVSGWRSPRFCQFPQEIVLQMVERCRIRKLQLLAHQYMISS
KIEFYISESLPEYFAPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDAVGQFLKLIFHQNHVNKYNIY
NQVALVAINIIGDPADFSDESNTASREKLIDHYLGHNSEDPALEGTYARKSDYISPLDDLAFDMYQDPEV
AQIIRKLDERKREAVQKERYDYAKKLKQAIADLQKVGERLGRYEVEKRCAVEKEDYDLAKEKKQQMEQYR
AEVYEQLELHSLLDAELMRRPFDLPLQPLARSGSPCHQKPMPSLPQLEERGTENQFAEPFLQEKPSSYSL
TISPQHSAVDPLLPATDPHPKINAESLPYDERPLPAIRKHYGEAVVEPEMSNADISDARRGGMLGEPEPL
TEKALREASSAIDVLGETLVAEAYCKTWSYREDALLALSKKLMEMPVGTPKEDLKNTLRASVFLVRRAIK
DIVTSVFQASLKLLKMIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDSSARLRVTAANFIQEMALFKE
VKSLQIIPSYLVQPLKANSSVHLAMSQMGLLARLLKDLGTGSSGFTIDNVMKFSVSALEHRVYEVRETAV
RIILDMYRQHQASILEYLPPDDSNTRRNILYKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIK
ALQGQLAALKEIQAEVQEKESDAVKPKNQDIQGGKAAPAEALGIPDEHYLDNLCIFCGERSESFTEEGLD
LHYWKHCLMLTRCDHCKQVVEISSLTEHLLTECDKKDGFGKCYRCSEAVFKEELPRHIKHKDCNPAKPEK
LANRCPLCHENFSPGEEAWKAHLMGPAGCTMNLRKTHILQKAPALQPGKSSAVAASGPLGSKAGSKIPTP
KGGLSKSSSRTYAKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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