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Report for CCDS19416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19416.1 Public Mus musculus 5 Pf4 23 108 98 CCDS HistoryNCBI Gene:56744Re-query CCDS DB by CCDS ID:19416.1Re-query CCDS DB by GeneID:56744See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031320.7 ENSMUSP00000031320.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031320.7Link to Ensembl Protein Viewer:ENSMUSP00000031320.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031320Re-query CCDS DB by Protein ID:ENSMUSP00000031320
Original member NCBI NM_019932.4 NP_064316.1 Updated not alive Link to Nucleotide Sequence:NM_019932.4Link to Protein Sequence:NP_064316.1Re-query CCDS DB by Nucleotide ID:NM_019932Re-query CCDS DB by Protein ID:NP_064316
Current member NCBI NM_019932.5 NP_064316.1 Accepted alive Link to Nucleotide Sequence:NM_019932.5Link to Protein Sequence:NP_064316.1Re-query CCDS DB by Nucleotide ID:NM_019932Re-query CCDS DB by Protein ID:NP_064316Link to BLAST:NP_064316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064316.1 105 Q9Z126 105 100% 0 0

Chromosomal Locations for CCDS 19416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 90772582 90772678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90772912 90773044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90773173 90773260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGAGCGTCGCTGCGGTGTTTCGAGGCCTCCGGCCCAGTCCTGAGCTGCTGCTTCTGGGCCTGTTGTTTC
TGCCAGCGGTGGTTGCTGTCACCAGCGCTGGTCCCGAAGAAAGCGATGGAGATCTTAGCTGTGTGTGTGT
GAAGACCATCTCCTCTGGGATCCATCTTAAGCACATCACCAGCCTGGAGGTGATCAAGGCAGGACGCCAC
TGTGCGGTTCCCCAGCTCATAGCCACCCTGAAGAATGGGAGGAAAATTTGCCTGGACCGGCAAGCACCCC
TATATAAGAAAGTAATCAAGAAAATCCTGGAGAGTTAG

Translation (105 aa):
MSVAAVFRGLRPSPELLLLGLLFLPAVVAVTSAGPEESDGDLSCVCVKTISSGIHLKHITSLEVIKAGRH
CAVPQLIATLKNGRKICLDRQAPLYKKVIKKILES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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