NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23290.1 Public Mus musculus 9 Rasl12 23 108 98 CCDS HistoryNCBI Gene:70784Re-query CCDS DB by CCDS ID:23290.1Re-query CCDS DB by GeneID:70784See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085453.5 ENSMUSP00000082580.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085453.5Link to Ensembl Protein Viewer:ENSMUSP00000082580.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085453Re-query CCDS DB by Protein ID:ENSMUSP00000082580
Original member Current member NCBI NM_001033158.2 NP_001028330.2 Accepted alive Link to Nucleotide Sequence:NM_001033158.2Link to Protein Sequence:NP_001028330.2Re-query CCDS DB by Nucleotide ID:NM_001033158Re-query CCDS DB by Protein ID:NP_001028330Link to BLAST:NP_001028330.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028330.2 266 Q08AT1 266 100% 0 0

Chromosomal Locations for CCDS 23290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65398565 65398667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65400919 65400975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65407577 65407650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65408310 65408500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65410781 65411156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGTCGTCGGTGTTCGGCAAGCCCCGAGCTGGCAGCGGGCCGCACAGCGTGCCCCTGGAAGTTAACCTGG
CT
ATCCTTGGGCGCCGCGGAGCGGGCAAGTCTGCCCTGACGGTGAAGTTCCTCACCAAGAGGTTTATCAG
C
GAATATGATCCCAATTTGGAGGACACCTACAGCTCTGAGGAGACTGTGGACCACCAGCCTGTGCACCTG
AGG
GTCATGGACACTGCAGACCTGGACACCCCCAGGAACTGCGAGCGCTACCTGAACTGGGCCCATGCCT
TC
TTGGTGGTGTATAGTGTCGATAGTCGTGCGAGTTTCGAGGGCAGCAGCAGCTACCTAGAGCTGCTGGC
C
TTGCATGCCAAGGAGACACAACGTGGCTACCCTGCTCTGCTGCTGGGCAACAAGCTTGACATGGCCCAG
TAC
AGGCAAGTCACCAAGGCTGAGGGTGCAGCTTTGGCAGGCAGATTCGGGTGCCTGTTTTTTGAGGTCT
CT
GCCTGCCTGGACTTTGAGCACGTGCAGCACGTCTTCCATGAGGCCGTGCGTGAGGTGCGGCGAGAGCT
G
GATAAGAGTCCCCTGGCCCGGCCCCTCTTCATCTCTGAGGAGAAAACCCTGTCCCACCAGACCCCGCTC
ACA
GCCCGGCATGGGCTGGCCAGCTGTACTTTCAACACTCTCTCTACTGCCAGCCTGAAAGAGATGCCCA
CT
GTGGCCCAGGCCAAGTTGGTCACTGTGAAATCATCTCGTGCCCAGAGCAAGCGCAAGGCACCCACCTT
G
ACTCTACTGAAGGGCTTCAAGATCTTCTGA


Translation (266 aa):
MSSVFGKPRAGSGPHSVPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL
R
VMDTADL
DTPRNCERYLNWAHAFLVVYSVDSRASFEGSSSYLELLALHAKETQRGYPALLLGNKLDMAQ
Y
RQVTKAEGAALAGRFGCLFFEVSACLDFEHVQHVFHEAVREVRRELDKSPLARPLFISEEKTLSHQTPL
T
ARHGLASCTFNTLSTASLKEMPTVAQAKLVTVKSSRAQSKRKAPTLTLLKGFKIF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser