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Report for CCDS36596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36596.1 Public Mus musculus 13 Prl2c2 23 108 98 CCDS HistoryNCBI Gene:18811Re-query CCDS DB by CCDS ID:36596.1Re-query CCDS DB by GeneID:18811See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110594.3 ENSMUSP00000106224.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110594.3Link to Ensembl Protein Viewer:ENSMUSP00000106224.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110594Re-query CCDS DB by Protein ID:ENSMUSP00000106224
Original member Current member NCBI NM_031191.2 NP_112468.1 Accepted alive Link to Nucleotide Sequence:NM_031191.2Link to Protein Sequence:NP_112468.1Re-query CCDS DB by Nucleotide ID:NM_031191Re-query CCDS DB by Protein ID:NP_112468Link to BLAST:NP_112468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112468.1 224 P04095-1 224 100% 0 0

Chromosomal Locations for CCDS 36596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 12996235 12996411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12997285 12997467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12998581 12998688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13002134 13002309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13005296 13005326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCTCCCTTCTTTGATTCAACCATGCTCCTGGATACTGCTCCTACTACTGGTGAACAGCTCGTTATTGT
GGAAGAATGTTGCCTCATTTCCCATGTGTGCAATGAGGAATGGTCGTTGCTTTATGTCCTTTGAAGACAC
ATTTGAATTAGCCGGCAGTTTGTCTCATAATATCAGTATAGAAGTTTCAGAACTGTTCACTGAATTTGAA
AAACATTATTCTAACGTGTCTGGGCTCAGAGACAAAAGCCCCATGAGATGCAATACTTCTTTCCTTCCAA
CTCCAGAAAACAAGGAACAAGCCAGGCTCACACACTATTCAGCTCTTCTGAAATCAGGAGCCATGATTTT
GGATGCCTGGGAAAGCCCTCTGGACGATCTAGTGAGTGAATTATCTACCATAAAAAATGTCCCTGATATA
ATCATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCGGAACGGGGTTAATGCCCTCATGA
GCACCATGCTTCAGAATGGAGATGAAGAAAAGAAGAACCCTGCCTGGTTCTTGCAATCTGACAATGAAGA
TGCTCGCATTCATTCTTTATATGGCATGATCAGCTGCCTAGACAATGACTTTAAGAAGGTTGATATTTAT
CTCAACGTCCTGAAGTGTTACATGTTAAAAATAGATAACTGCTGA

Translation (224 aa):
MLPSLIQPCSWILLLLLVNSSLLWKNVASFPMCAMRNGRCFMSFEDTFELAGSLSHNISIEVSELFTEFE
KHYSNVSGLRDKSPMRCNTSFLPTPENKEQARLTHYSALLKSGAMILDAWESPLDDLVSELSTIKNVPDI
IISKATDIKKKINAVRNGVNALMSTMLQNGDEEKKNPAWFLQSDNEDARIHSLYGMISCLDNDFKKVDIY
LNVLKCYMLKIDNC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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