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Report for CCDS84288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84288.1 Public Mus musculus 17 Mtch1 23 108 98 CCDS HistoryNCBI Gene:56462Re-query CCDS DB by CCDS ID:84288.1Re-query CCDS DB by GeneID:56462See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118366.8 ENSMUSP00000113021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118366.8Link to Ensembl Protein Viewer:ENSMUSP00000113021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118366Re-query CCDS DB by Protein ID:ENSMUSP00000113021
Original member Current member NCBI NM_001347335.1 NP_001334264.1 Accepted alive Link to Nucleotide Sequence:NM_001347335.1Link to Protein Sequence:NP_001334264.1Re-query CCDS DB by Nucleotide ID:NM_001347335Re-query CCDS DB by Protein ID:NP_001334264Link to BLAST:NP_001334264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334264.1 372 Q791T5-2 372 100% 0 0

Chromosomal Locations for CCDS 84288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29332707 29332778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29333514 29333589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29333775 29333842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29333958 29334005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29336218 29336311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29338742 29338801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29339791 29339842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29340068 29340125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29340421 29340498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29340791 29340897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29342823 29342907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29347467 29347787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGGGGCTTCGGACCCGGAAGTGGCGCCTTGGGCTCCCGGCGGCGCCGCGGGGATGGCGGGAGCCGGAG
CTGGTGCAGGAGCTCGGGGCGGCGCGCCGGCCGGAGTCGAGGCCCGCGCTCGGGACCCGCCACCCGCGCA
CCGCGCGCACCCTCGCCATCCTCGGCCCGCGGCTCAGCCGTCGGCGCGCAGGATGGACGGCGGCCCGGGC
GCCCCGGGCTCCGGGGACAACGCCCCGACCACCGAGGCGCTGTTCGTGGCGCTGGGCGCGGGCGTGACGG
CTCTCAGTCACCCGCTGCTCTACGTGAAGCTGCTGATCCAGGTGGGTCATGAGCCGATGCCCCCCACCCT
TGGGACCAATGTGCTGGGGAGGAAGGTCCTCTACCTGCCGAGCTTCTTCACCTATGCCAAGTACATTGTG
CAGGTGGATGGGAAGATAGGGCTCTTCCGGGGCCTGAGCCCCCGCCTTATGTCCAACGCCTTGTCCACTG
TGACCCGCGGCAGCATGAAGAAGGTTTTCCCTCCAGATGAGATGGAGCAGGTTTCCAACAAGGACGACAT
GAAGACCTCACTCAAGAAAGTTGTGAAGGAGACATCGTATGAGATGATGATGCAGTGTGTATCGCGAATG
CTGGCCCATCCCTTACACGTGATCTCGATGCGATGCATGGTGCAGTTTGTGGGACGGGAGGCCAAGTACA
GTGGTGTGCTGAGTTCTATTGGGAAGATCTTCAAGGAAGAGGGGCTGCTGGGATTCTTCGTTGGCTTAAT
CCCTCACCTCCTGGGCGATGTGGTTTTCTTGTGGGGCTGTAACCTGCTGGCCCACTTCATCAATGCCTAC
TTGGTGGACGACAGCTTTAGCCAGGCCCTGGCCATCCGGAGCTACACCAAGTTTGTGATGGGGATTGCAG
TGAGCATGCTGACCTACCCCTTCCTGCTCGTTGGAGATCTCATGGCAGTGAACAACTGTGGGCTGCGGGC
TGGACTCCCTCCGTATTCCCCTGTGTTCAAGTCCTGGATCCACTGCTGGAAGTACCTGAGTGTGCAGGGC
CAGCTCTTCCGCGGCTCCAGCCTGCTTTTCCGCCGGGTGTCATCGGGGTCATGCTTTGCCCTGGAGTAA

Translation (372 aa):
MGASDPEVAPWAPGGAAGMAGAGAGAGARGGAPAGVEARARDPPPAHRAHPRHPRPAAQPSARRMDGGPG
APGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQVGHEPMPPTLGTNVLGRKVLYLPSFFTYAKYIV
QVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPPDEMEQVSNKDDMKTSLKKVVKETSYEMMMQCVSRM
LAHPLHVISMRCMVQFVGREAKYSGVLSSIGKIFKEEGLLGFFVGLIPHLLGDVVFLWGCNLLAHFINAY
LVDDSFSQALAIRSYTKFVMGIAVSMLTYPFLLVGDLMAVNNCGLRAGLPPYSPVFKSWIHCWKYLSVQG
QLFRGSSLLFRRVSSGSCFALE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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