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Report for CCDS48679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48679.1 Public Mus musculus 10 Galnt4 23 108 98 CCDS HistoryNCBI Gene:14426Re-query CCDS DB by CCDS ID:48679.1Re-query CCDS DB by GeneID:14426See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161240.3 ENSMUSP00000125315.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161240.3Link to Ensembl Protein Viewer:ENSMUSP00000125315.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000161240Re-query CCDS DB by Protein ID:ENSMUSP00000125315
Original member Current member NCBI NM_015737.4 NP_056552.1 Accepted alive Link to Nucleotide Sequence:NM_015737.4Link to Protein Sequence:NP_056552.1Re-query CCDS DB by Nucleotide ID:NM_015737Re-query CCDS DB by Protein ID:NP_056552Link to BLAST:NP_056552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056552.1 578 O08832 578 100% 0 0

Chromosomal Locations for CCDS 48679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 99108415 99110151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGCCGTGAGGTGGACCTGGGCAGGCAAGAGCTGCCTGCTGCTGGCCCTTTTAACACTGGCTTATATTC
TGGTGGAGTTCTCAGTCTCCACTTTGTATGCCTCTCCAGGAGCCGGCGGTGCCAGGGAGCTGGGGCCAAG
GCGGCTCCCGGACCTTGATACAAGGGAAGAGGATTTGTCTCAGCCTCTTTATATAAAGCCCCCTGCAGAT
TCCCATGCTCTTGGGGAATGGGGGAGAGCAAGCAAACTCCAGCTCAACGAGGGGGAACTGAAGCAGCAAG
AAGAACTTATTGAGAGATATGCCATCAACATTTACCTCAGTGACAGGATCTCCCTGCACCGCCACATAGA
GGATAAAAGAATGTATGAGTGTAAAGCCAAGAAGTTCCACTACAGGTCGCTCCCCACCACCTCCGTTATC
ATCGCCTTCTATAACGAAGCCTGGTCCACTCTGCTTCGGACCATTCACAGTGTTTTAGAAACTTCTCCAG
CTGTGCTTTTAAAGGAGATCATCTTGGTGGATGACTTGAGTGATAGAATTTATTTGAAGGCGCAACTTGA
AACTTACATCAGCAACCTGGAGAGAGTTCGCTTGATTAGAACCAATAAGAGAGAGGGGCTGGTCCGGGCC
CGTCTAATTGGGGCCACTTTTGCCACCGGGGATGTCCTCACTTTCCTGGATTGTCACTGTGAGTGTAACA
CTGGTTGGTTGGAACCACTTTTGGAGAGGATCAGTAGAGACGAAACCGCAATCGTATGTCCTGTCATCGA
CACTATTGACTGGAACACTTTCGAATTCTACATGCAGACCGGGGAGCCCATGATTGGTGGGTTTGACTGG
CGTTTGACCTTCCAGTGGCATTCTGTCCCCAAACATGAAAGGGACAGGCGAACGTCAAGAATTGACCCCA
TCAGGTCCCCCACCATGGCAGGAGGACTGTTTGCTGTCAGCAAGAAGTATTTTCAGTACCTGGGCACCTA
TGACACTGGCATGGAAGTCTGGGGAGGCGAAAACCTTGAGTTGTCTTTCAGGGTTTGGCAGTGTGGCGGC
AAGCTGGAGATCCACCCATGCTCGCACGTGGGCCACGTGTTTCCCAAGCGCGCGCCCTATGCTCGCCCCA
ACTTCCTACAGAATACCGCGCGGGCGGCCGAAGTGTGGATGGATGAATACAAAGAGCATTTCTATAACCG
AAACCCCCCAGCTCGGAAAGAGGCCTATGGCGATCTTTCTGAAAGGAAGTTACTAAGGGAACGGCTGAAA
TGTAAGAGCTTCGACTGGTATCTGAAAAATGTGTTCTCTAACTTACACGTCCCCGAGGATAGACCTGGCT
GGCACGGAGCCATCCGCAGCATGGGCATCTCTTCCGAGTGCTTAGATTATAACGCTCCCGACAACAACCC
TACGGGGGCTAATCTTTCGTTGTTTGGATGCCACGGTCAAGGAGGCAATCAGTTCTTTGAATATACTTCA
AACAAAGAAATCAGATTCAATTCCGTGACTGAATTATGTGCAGAGGTCCCCCAACAAAAGGATTATGTAG
GGATGCAAAACTGCCCCAAAGACGGGCTCCCAGTTCCAGTGAACATCATTTGGCATTTTAAAGAAGACGG
AACGATTTTTCACCCTCACACAAGACTGTGTCTTAGTGCTTACCGGACAGCCGAGGGCCGACCTAGTGTC
CATATGAAAACGTGTGATGCCCTTGATAAAAACCAGCTCTGGAGGTTTGAGAAATAG

Translation (578 aa):
MAVRWTWAGKSCLLLALLTLAYILVEFSVSTLYASPGAGGARELGPRRLPDLDTREEDLSQPLYIKPPAD
SHALGEWGRASKLQLNEGELKQQEELIERYAINIYLSDRISLHRHIEDKRMYECKAKKFHYRSLPTTSVI
IAFYNEAWSTLLRTIHSVLETSPAVLLKEIILVDDLSDRIYLKAQLETYISNLERVRLIRTNKREGLVRA
RLIGATFATGDVLTFLDCHCECNTGWLEPLLERISRDETAIVCPVIDTIDWNTFEFYMQTGEPMIGGFDW
RLTFQWHSVPKHERDRRTSRIDPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGENLELSFRVWQCGG
KLEIHPCSHVGHVFPKRAPYARPNFLQNTARAAEVWMDEYKEHFYNRNPPARKEAYGDLSERKLLRERLK
CKSFDWYLKNVFSNLHVPEDRPGWHGAIRSMGISSECLDYNAPDNNPTGANLSLFGCHGQGGNQFFEYTS
NKEIRFNSVTELCAEVPQQKDYVGMQNCPKDGLPVPVNIIWHFKEDGTIFHPHTRLCLSAYRTAEGRPSV
HMKTCDALDKNQLWRFEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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