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Report for CCDS16498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16498.1 Public Mus musculus 2 Rcn1 23 108 98 CCDS HistoryNCBI Gene:19672Re-query CCDS DB by CCDS ID:16498.1Re-query CCDS DB by GeneID:19672See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006128.6 ENSMUSP00000006128.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006128.6Link to Ensembl Protein Viewer:ENSMUSP00000006128.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006128Re-query CCDS DB by Protein ID:ENSMUSP00000006128
Original member Current member NCBI NM_009037.2 NP_033063.1 Accepted alive Link to Nucleotide Sequence:NM_009037.2Link to Protein Sequence:NP_033063.1Re-query CCDS DB by Nucleotide ID:NM_009037Re-query CCDS DB by Protein ID:NP_033063Link to BLAST:NP_033063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033063.1 325 Q05186 325 100% 0 0

Chromosomal Locations for CCDS 16498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 105387919 105388026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105388977 105389176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105391970 105392030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105393589 105393767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105394679 105394872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105398970 105399205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGCGCGGTGGCCGCTTGGGACTCGCCCTGGGGCTGCTGCTGGCGCTGGTGCTGGCGCTGCGGGCCA
AGCCCACGGTGCGCAAGGAGCGCGTGGTTCGGCCGGACTCAGAGCTGGGCGAGCGGCCGCCCGAGGACAA
CCAGAGCTTCCAGTACGATCATGAGGCCTTCCTGGGCAAGGAGGACTCCAAGACCTTCGATCAGCTAAGC
CCGGACGAGAGCAAGGAGAGGCTGGGGAAAATTGTGGATCGAATTGACAGTGATGGTGATGGCCTTGTTA
CTACTGAGGAGCTGAAACTTTGGATCAAACGGGTACAGAAAAGATACATCTATGATAATGTCGCTAAAGT
CTGGAAGGATTATGATAGGGACAAAGACGAAAAGATCTCCTGGGAAGAATACAAGCAGGCCACCTATGGC
TACTACCTGGGAAACCCCGCTGAATTCCATGATAGTTCTGATCACCACACCTTTAAAAAGATGCTGCCAC
GAGATGAGAGGAGGTTTAAGGCTTCAGACCTTGACGGCGACCTGACAGCTACTCGGGAGGAGTTCACTGC
CTTTCTGCACCCAGAGGAGTTTGAACATATGAAGGAGATTGTAGTCCTGGAAACCCTGGAGGACATCGAC
AAGAACGGGGATGGTTTTGTGGACCAGGATGAGTACATCGCGGACATGTTTTCCCACGAGGACAATGGCC
CTGAGCCAGACTGGGTTTTGTCTGAACGGGAGCAGTTCAACGACTTCCGAGATCTGAACAAGGATGGGAA
GCTGGACAAGGATGAGATTCGCCACTGGATCCTCCCTCAGGACTACGACCATGCGCAGGCCGAGGCCCGG
CATCTGGTGTACGAGTCAGACAAAAACAAGGACGAGATGCTGACCAAGGAGGAGATTCTGGACAACTGGA
ACATGTTTGTGGGAAGCCAAGCTACCAACTACGGGGAAGACCTGACCAAAAATCATGATGAACTTTGA

Translation (325 aa):
MARGGRLGLALGLLLALVLALRAKPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLS
PDESKERLGKIVDRIDSDGDGLVTTEELKLWIKRVQKRYIYDNVAKVWKDYDRDKDEKISWEEYKQATYG
YYLGNPAEFHDSSDHHTFKKMLPRDERRFKASDLDGDLTATREEFTAFLHPEEFEHMKEIVVLETLEDID
KNGDGFVDQDEYIADMFSHEDNGPEPDWVLSEREQFNDFRDLNKDGKLDKDEIRHWILPQDYDHAQAEAR
HLVYESDKNKDEMLTKEEILDNWNMFVGSQATNYGEDLTKNHDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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