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Report for CCDS15682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15682.1 Public Mus musculus 2 Prkcq 23 108 98 CCDS HistoryNCBI Gene:18761Re-query CCDS DB by CCDS ID:15682.1Re-query CCDS DB by GeneID:18761See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028118.8 ENSMUSP00000028118.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028118.8Link to Ensembl Protein Viewer:ENSMUSP00000028118.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028118Re-query CCDS DB by Protein ID:ENSMUSP00000028118
Original member NCBI NM_008859.2 NP_032885.1 Updated not alive Link to Nucleotide Sequence:NM_008859.2Link to Protein Sequence:NP_032885.1Re-query CCDS DB by Nucleotide ID:NM_008859Re-query CCDS DB by Protein ID:NP_032885
Current member NCBI NM_008859.3 NP_032885.1 Accepted alive Link to Nucleotide Sequence:NM_008859.3Link to Protein Sequence:NP_032885.1Re-query CCDS DB by Nucleotide ID:NM_008859Re-query CCDS DB by Protein ID:NP_032885Link to BLAST:NP_032885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032885.1 707 Q02111 707 100% 0 0

Chromosomal Locations for CCDS 15682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11226868 11226985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11232530 11232729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11236018 11236078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11245253 11245415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11246799 11246830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11246928 11247013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11248201 11248330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11253069 11253178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11254171 11254288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11256157 11256317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11260653 11260826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11277015 11277106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11279466 11279528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11283746 11283884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11290389 11290577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11299295 11299423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11299967 11300125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGTCACCGTTTCTTCGAATCGGTTTATCCAACTTTGACTGTGGGACCTGCCAAGCTTGTCAGGGAGAGG
CAGTGAACCCCTACTGCGCTGTGCTTGTCAAAGAGTATGTGGAATCAGAAAATGGGCAGATGTACATCCA
GAAAAAGCCAACCATGTACCCACCTTGGGACAGCACCTTTGACGCCCACATTAACAAGGGAAGGGTGATG
CAGATCATCGTGAAGGGCAAGAATGTAGACCTCATCTCAGAAACAACCGTGGAACTCTACTCCCTGGCGG
AGAGATGCCGCAAGAACAATGGGCGGACAGAAATATGGTTAGAGCTGAAACCTCAAGGCCGAATGCTAAT
GAATGCAAGATACTTTCTGGAAATGAGTGACACAAAGGACATGAGTGAGTTTGAGAATGAAGGATTCTTT
GCACTGCATCAGCGCCGAGGAGCCATCAAACAGGCCAAAGTCCACCATGTCAAGTGTCACGAGTTCACGG
CCACCTTTTTCCCTCAACCCACATTTTGCTCTGTCTGCCATGAATTTGTCTGGGGCCTGAACAAGCAGGG
TTACCAGTGCCGACAGTGTAATGCAGCGATTCACAAGAAGTGCATTGATAAAGTGATAGCCAAGTGCACA
GGATCCGCAATCAATAGCCGAGAAACCATGTTCCATAAGGAGAGATTCAAGATCGACATGCCACACAGAT
TCAAAGTCTACAACTACAAGAGTCCAACCTTCTGTGAGCACTGTGGTACCCTGCTCTGGGGGCTGGCGAG
GCAAGGACTCAAATGTGATGCATGTGGCATGAACGTCCACCACCGATGCCAGACAAAGGTTGCCAATCTT
TGTGGTATAAACCAGAAGCTAATGGCTGAAGCACTAGCGATGATTGAAAGCACCCAACAGGCTCGCTCCT
TACGAGATTCAGAACACATCTTCCGAGAAGGCCCAGTTGAAATTGGTCTCCCATGCTCCACCAAAAACGA
AACCAGGCCACCATGCGTACCAACACCTGGGAAAAGAGAACCCCAGGGCATTTCCTGGGATTCCCCTTTG
GATGGGTCAAATAAATCGGCCGGTCCTCCTGAACCCGAAGTGAGCATGCGCAGGACTTCACTGCAGCTGA
AACTGAAGATCGATGACTTCATCCTGCACAAGATGTTGGGAAAAGGAAGTTTTGGCAAGGTCTTCCTGGC
AGAGTTCAAGAGAACCAATCAGTTTTTCGCAATAAAAGCCTTAAAGAAAGATGTGGTGTTGATGGATGAT
GACGTCGAGTGTACAATGGTGGAAAAGAGGGTTCTGTCCTTGGCATGGGAGCATCCATTTCTAACACACA
TGTTCTGCACATTCCAGACCAAGGAAAATCTCTTTTTCGTGATGGAGTATCTCAATGGAGGCGACTTAAT
GTACCACATCCAAAGTTGCCACAAATTTGATCTTTCCAGAGCCACGTTTTATGCTGCTGAGGTCATCCTT
GGTCTGCAGTTCCTTCATTCCAAAGGAATTGTCTACAGGGACCTGAAGCTTGATAATATCCTGTTAGACA
GAGATGGACATATCAAAATAGCAGACTTTGGGATGTGCAAAGAGAACATGCTAGGAGATGCGAAGACAAA
TACTTTCTGTGGAACTCCTGACTACATTGCTCCGGAGATCTTGCTGGGTCAGAAGTACAACCATTCCGTC
GACTGGTGGTCCTTCGGGGTGCTCGTTTATGAGATGCTGATTGGCCAGTCCCCCTTCCACGGGCAGGACG
AGGAGGAGCTGTTCCACTCCATCCGCATGGACAACCCCTTCTACCCGAGGTGGCTCGAAAGGGAGGCCAA
GGACCTTCTAGTGAAGCTTTTTGTGAGAGAACCTGAGAAGAGGCTGGGAGTGAGAGGAGACATCCGCCAG
CATCCTTTGTTTCGAGAGATCAACTGGGAAGAGCTTGAAAGGAAAGAGATTGACCCACCCTTCAGACCAA
AAGTGAAATCACCATATGACTGTAGCAATTTCGACAAGGAATTCCTAAGTGAGAAACCCCGGCTATCATT
CGCCGACAGAGCACTCATCAACAGCATGGACCAGAACATGTTCAGCAACTTTTCCTTCATTAACCCAGGG
ATGGAGACTCTCATTTGCTCCTGA

Translation (707 aa):
MSPFLRIGLSNFDCGTCQACQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVM
QIIVKGKNVDLISETTVELYSLAERCRKNNGRTEIWLELKPQGRMLMNARYFLEMSDTKDMSEFENEGFF
ALHQRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCT
GSAINSRETMFHKERFKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANL
CGINQKLMAEALAMIESTQQARSLRDSEHIFREGPVEIGLPCSTKNETRPPCVPTPGKREPQGISWDSPL
DGSNKSAGPPEPEVSMRRTSLQLKLKIDDFILHKMLGKGSFGKVFLAEFKRTNQFFAIKALKKDVVLMDD
DVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEVIL
GLQFLHSKGIVYRDLKLDNILLDRDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSV
DWWSFGVLVYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEREAKDLLVKLFVREPEKRLGVRGDIRQ
HPLFREINWEELERKEIDPPFRPKVKSPYDCSNFDKEFLSEKPRLSFADRALINSMDQNMFSNFSFINPG
METLICS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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