NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39353.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39353.2 Public Mus musculus 5 Micall2 23 108 98 CCDS HistoryNCBI Gene:231830Re-query CCDS DB by CCDS ID:39353.2Re-query CCDS DB by GeneID:231830See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39353.2
The coding region has been updated to extend the N-terminus and to correct mismatches versus the reference genome assembly in the coding region which results in 4 aa changes to the C-terminus of the protein. This N-terminal extension is 114aa long, is supported by available conservation data and adds a CH (calponin homology) domain (SMART).

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39353.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044642.13 ENSMUSP00000039707.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044642.13Link to Ensembl Protein Viewer:ENSMUSP00000039707.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000044642Re-query CCDS DB by Protein ID:ENSMUSP00000039707
Original member Current member NCBI NM_174850.3 NP_777275.2 Accepted alive Link to Nucleotide Sequence:NM_174850.3Link to Protein Sequence:NP_777275.2Re-query CCDS DB by Nucleotide ID:NM_174850Re-query CCDS DB by Protein ID:NP_777275Link to BLAST:NP_777275.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777275.2 1009 Q3TN34 1009 100% 0 0

Chromosomal Locations for CCDS 39353.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139706836 139706909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139707062 139707108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139708886 139709000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139709516 139709589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139709691 139709781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139710203 139710326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139710402 139710466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139710583 139710732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139711554 139711711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139712287 139712380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139713141 139713397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139715706 139716845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139717439 139717554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139718223 139718413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139719244 139719385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139721948 139721996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139736018 139736160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3030 nt):
ATGGCCGCCATAAAGGCCCTGCAAGAATGGTGCCGGCAGCAGTGCGAGGGCTACCGGGACGTGAGCATCA
CCAACATGACCACCTCGTTCCGCGATGGCCTGGCCTTCTGCGCTATCTTGCACCGACACCGGCCTGACCT
TATAAACTTCAGTGCCCTCCGGAAGGAAAACATTTACGAGAACAACAAGTTGGCCTTCCAAGTGGCTGAG
GAACAGCTGGGCATCCCAGCCCTGCTAGACGCTGAGGACATGGTGGCCTTGAAGGTTCCAGACCGGCTGA
GCATTCTCACCTATGTGTCACAATACTACAACTACTTCCATGGCCGGTCCCCAATTGGGGGCATGGCTGG
CATAAAGAGACCCTCATCCGATTCGACCGAAGAACTTTCTGGAAAGAAGGGCCTGTCCCAGCCTGCCAAG
TTGCCCTCGCCGGCTCAAACCCAGAGGTCACCACTGTCCCCAGCTCGGACAAACCCTGTGGTTCAGAGGA
ATGAAGGTGGCTCACAAAGACCATCCCCAAAGGCTGCTCCGGGGACCGCGGGAAGCTCTGTCAGCAGTAT
CTGTGGGGTCTGTGGCAAACATGTTCACCTTGTGCAGCGGCACCTGGCTGACGGGCGCCTCTACCACCGA
AGCTGCTTCAGGTGTAAACAGTGCTCCAGCACGCTGCACTCGGGGGCCTACCGTGCCACGGGAGAGCCCG
GAGTCTTCGTCTGTACCCACCACAGCTCAGAAGTCACCTCTGTGAGCCCCAAGTCATCAAACCTGGCCTC
CAGGAAACCAGGGGGTGTCACTGCAGACACCAGGCCATTCGGCGTCTCATGGACGGTTCAGGAGGCAAAT
GGAGAGGGGACACCACTGAGGGTCAGGACAGCAGCATGGGAACACGCTGGAGGAAACACAACCGCCAAAG
GTTTTGTCCAGACGGAACTTAAGCCACCATCTACCTCCCAAGTCCACGTGGGGAGCTCTGCGGGGCCCAA
GCTACCCACGATCACAGTGACTACTACTTCTGTGACTAGCAAAGCTCTCACCCATGTGACGAATAGCTCC
CCAATAGGATGGTCATCGCCTGCCCAGAGCAGCCCAGCGAACTTCAACTCCCGCCCAGTTGTATCCCCAA
GTGCTCGGAACACTCACCTACCTGGGTCCCAAGGGCAGACAGCCTCAAAAGGTGTTAAGACTCAGCTCAA
CTTGAACTCAGAGTCTTCAAACACAGCGGTCACCCCAGCCTGGACTTCCTCAGCCTCTAAGACCCAGCAG
GCCCGAGAGAAATTTTTCCAGACCCCTCCCTCGGCCCCAGCCCCAGCCTCAGCCCCAGCCCCAGCCCCCA
CCAGCAAGGTCCCCACTGTAGTGACTGTCCCCACCAGCAAGGTCCCCAATGTGGTGACTGCCCCCACCAG
CAAGGTCCCCACTGTAGTGACTGTCCCCACCAGCAAGGTCCCCACTGTGGTGTCTGCCCCCACCAGCAAG
GTCCCTACTGTGGTGTCTGCCCCCACCAGCAAGGTCCCCACTGTGGTGAATTCCACTAATAGCAGGGTCA
CCACGGTAGTAAATGCCCCCACCAGCAAGGTCCCCACTGTAGTGAGTGCCACAAATGGCAGGGTGCCCAC
TGTGGTGACTGCCCACACTGGTAGGGTCCCTGCTGTGATGAATACCTCTGCCAGCAAAGTCTCTCCTGTT
GTGGATGCCCCTGCCCAGGAGAGCAGCCGGGAGCAAGCATTAAGTGTCCTTAGGAAGGCCCTTCCGGCGC
TGACAGGATCTGGTACCCAGGCTCCAAACAGGTCCTTCCCAGCCACTTCCTCTGTCCTGGTAACCCTTCC
CAAGAATGAAGTGCCACAAAAAGTTCCCTCAGACAAGCTCTCAGCTTTAACCACCCAGACTCCTAATTTC
ACTATAAAGCTAGAGCCTTCAGCCCCAGTGAATGTGGGCAATACCGCTGTATTTCTCCAGGCTGGCAAAA
AGAGCCCGAGTATTTCTCCAAGGGTTGGTAAGACCAGCGTTGGCTCCAGGCCACAAGCAGAGGTGGCAGG
AGTAAAGGGTCCAGGTCCCATCTCTCAGGAAGGCCAAGAGGAGGGACCAGAAGGATGGAGGGCCCGGCTG
AAGCCTGTGGATAAGAAAACCCCTGCTGGGAGGTCTCTGGAGCAAAAAGAGCCAGTCCTGGCAGAGCCAA
GGATAGGTGACACTTCCAGGAAAGCCTCTAGTAGCTCTGACTCCAGCGTCCATATCACCTTGACTTCTAT
TCAGCACAAGAGGAAACCATGCCCTGCTGGTTCCGGGCCCAGTCCTGCAGCCCTCTCTCCTTCTCCATCA
CACCGCAAGAAACTAGCTGTCCCTCCCAGCCTTGATGTTTCAGCTGATTGGCTCCAGCCAGAGCCCAAGA
AGCAGGAAGATGGGACCAGGAGCTGTAAGGAGGAGAAGTCACCCACCAGGTGGTCAAGAGAGAGGTCTGC
AGTCCTGGACAGTGGCCTTGCTCCACCTGGTGAAGCTGTCACTTCCCCAGTCAGGCTCCACCCCGACTAT
ATCCCCCAGGAGGAGCTGCAGAGGCAGCTGCAGGACATTGAGAGCCAACTGGACGCCCTGGAGCTCAGGG
GTGTTGAGTTGGAGAAGCGGCTGCGGGCAGCTGAGGGAGATGCTTCTGAGGATAGCCTCATGGTGGACTG
GTTCCGGCTTATTCATGAGAAGCAGCTACTGTTGAGGCTGGAATCGGAACTCATGTACAAGTCCAAGGAC
CAGCGCCTGGAGGAGCAGCAGCTGGACCTCCAGGGTGAGCTGCGCAGGCTGATGGACAAGCCAGAGGGTC
TGAAGTCCCCCCAGGACCGCCAGCGGGAGCAGGAGCTGCTGAGCCAATACGTGAACACCGTGAATGACCG
AAGTGACATCGTTGACTTCCTGGATGAGGATCGGCTCCGGGAACAGGAAGAGGACCAAATGCTGGAGAAT
ATGATCCAGAACCTGGGCCTCCAGAGAAAGAAGTCCAAGTCCTTCTTGTCCAAGATCTGGTCCTCGAAGA
GCAAAAGCGGGCAGGCCTGA

Translation (1009 aa):
MAAIKALQEWCRQQCEGYRDVSITNMTTSFRDGLAFCAILHRHRPDLINFSALRKENIYENNKLAFQVAE
EQLGIPALLDAEDMVALKVPDRLSILTYVSQYYNYFHGRSPIGGMAGIKRPSSDSTEELSGKKGLSQPAK
LPSPAQTQRSPLSPARTNPVVQRNEGGSQRPSPKAAPGTAGSSVSSICGVCGKHVHLVQRHLADGRLYHR
SCFRCKQCSSTLHSGAYRATGEPGVFVCTHHSSEVTSVSPKSSNLASRKPGGVTADTRPFGVSWTVQEAN
GEGTPLRVRTAAWEHAGGNTTAKGFVQTELKPPSTSQVHVGSSAGPKLPTITVTTTSVTSKALTHVTNSS
PIGWSSPAQSSPANFNSRPVVSPSARNTHLPGSQGQTASKGVKTQLNLNSESSNTAVTPAWTSSASKTQQ
AREKFFQTPPSAPAPASAPAPAPTSKVPTVVTVPTSKVPNVVTAPTSKVPTVVTVPTSKVPTVVSAPTSK
VPTVVSAPTSKVPTVVNSTNSRVTTVVNAPTSKVPTVVSATNGRVPTVVTAHTGRVPAVMNTSASKVSPV
VDAPAQESSREQALSVLRKALPALTGSGTQAPNRSFPATSSVLVTLPKNEVPQKVPSDKLSALTTQTPNF
TIKLEPSAPVNVGNTAVFLQAGKKSPSISPRVGKTSVGSRPQAEVAGVKGPGPISQEGQEEGPEGWRARL
KPVDKKTPAGRSLEQKEPVLAEPRIGDTSRKASSSSDSSVHITLTSIQHKRKPCPAGSGPSPAALSPSPS
HRKKLAVPPSLDVSADWLQPEPKKQEDGTRSCKEEKSPTRWSRERSAVLDSGLAPPGEAVTSPVRLHPDY
IPQEELQRQLQDIESQLDALELRGVELEKRLRAAEGDASEDSLMVDWFRLIHEKQLLLRLESELMYKSKD
QRLEEQQLDLQGELRRLMDKPEGLKSPQDRQREQELLSQYVNTVNDRSDIVDFLDEDRLREQEEDQMLEN
MIQNLGLQRKKSKSFLSKIWSSKSKSGQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH