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Report for CCDS20246.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20246.2 Public Mus musculus 6 Suclg1 23 108 98 CCDS HistoryNCBI Gene:56451Re-query CCDS DB by CCDS ID:20246.2Re-query CCDS DB by GeneID:56451See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20246.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 13 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20246.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064740.8 ENSMUSP00000065113.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064740.8Link to Ensembl Protein Viewer:ENSMUSP00000065113.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064740Re-query CCDS DB by Protein ID:ENSMUSP00000065113
Original member Current member NCBI NM_019879.3 NP_063932.2 Accepted alive Link to Nucleotide Sequence:NM_019879.3Link to Protein Sequence:NP_063932.2Re-query CCDS DB by Nucleotide ID:NM_019879Re-query CCDS DB by Protein ID:NP_063932Link to BLAST:NP_063932.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_063932.2 346 Q9WUM5 346 100% 0 0

Chromosomal Locations for CCDS 20246.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 73248657 73248753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73256171 73256274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73260475 73260591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73263808 73264020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73264230 73264287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73269315 73269398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73270971 73271122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73275201 73275389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73276682 73276708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGACCGCAACAGTAGTTGCTGCGGCTGCCACTGCAACCATGGTCTCCAGCAGCAGCGGCCTCGCCGCCG
CCCGCCTGTTGTCGCGCACCTTCCTCCTGCAACAGAATGGGATACGACACGGGTCTTACACAGCCTCTCG
GAAACATATCTATATTGATAAAAATACGAAGATTATTTGCCAGGGTTTCACAGGCAAACAGGGTACCTTT
CACAGTCAGCAGGCTTTGGAGTACGGCACCAAACTCGTGGGAGGAACCACTCCAGGGAAGGGTGGCCAGA
AGCACCTGGGCTTGCCCGTCTTTAATACTGTGAAGGAAGCCAAAGAGAAAACAGGAGCAACGGCTTCTGT
CATCTATGTCCCTCCTCCTTTTGCTGCTGCTGCCATTAATGAAGCAATCGACGCGGAGATTCCCTTGGTT
GTGTGCATTACGGAAGGTATTCCGCAGCAGGATATGGTGCGGGTCAAGCACAGACTGACACGCCAGGGAA
CGACGAGGCTAATCGGGCCAAACTGCCCCGGCGTCATCAACCCTGGAGAATGCAAAATCGGCATCATGCC
TGGCCACATTCACAAGAAGGGAAGAATAGGTATCGTGTCCAGGTCCGGTACTCTGACTTATGAAGCAGTT
CACCAAACAACCCAAGTCGGATTGGGGCAGTCCTTGTGTATTGGCATTGGAGGTGACCCTTTTAATGGGA
CTGATTTTATTGATTGCCTTGAAGTCTTCCTGAATGATCCAGCCACAGAAGGCATCATACTGATTGGTGA
AATTGGTGGTCACGCTGAAGAAAATGCTGCCGCGTTTCTGAAGGAGCATAACTCAGGTCCAAAGGCCAAG
CCTGTAGTGTCCTTCATTGCTGGTATAACTGCTCCTCCTGGCAGAAGGATGGGCCATGCAGGGGCAATTA
TTGCTGGAGGAAAAGGTGGCGCTAAAGAGAAGATCTCTGCTCTTCAGAGTGCTGGGGTGGTTGTCAGCAT
GTCCCCCGCACAGCTGGGAACTACCATTTATAAGGAGTTTGAAAAGAGGAAGATGCTTTGA

Translation (346 aa):
MTATVVAAAATATMVSSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTF
HSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLV
VCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAV
HQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAK
PVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEKRKML


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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