NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57585.1 Public Mus musculus 7 Sez6l2 23 108 98 CCDS HistoryNCBI Gene:233878Re-query CCDS DB by CCDS ID:57585.1Re-query CCDS DB by GeneID:233878See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106335.7 ENSMUSP00000101942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106335.7Link to Ensembl Protein Viewer:ENSMUSP00000101942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106335Re-query CCDS DB by Protein ID:ENSMUSP00000101942
Original member Current member NCBI NM_001252566.1 NP_001239495.1 Accepted alive Link to Nucleotide Sequence:NM_001252566.1Link to Protein Sequence:NP_001239495.1Re-query CCDS DB by Nucleotide ID:NM_001252566Re-query CCDS DB by Protein ID:NP_001239495Link to BLAST:NP_001239495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239495.1 910 Q4V9Z5-1 910 100% 0 0

Chromosomal Locations for CCDS 57585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126951038 126951116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126952000 126952131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126952774 126953073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126953385 126953524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126953715 126953916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126958269 126958454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126959047 126959215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126959791 126959954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126961737 126961937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126962353 126962491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126963265 126963461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126963563 126963757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126966725 126966916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126967014 126967205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126967927 126968044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126968160 126968256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126970053 126970082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGGGGACTCCCAAGGCCCAGCACCCGCCGCCTTCCCAGCTGCTGCTCCTAATTCTGCTGAGCTGTGCCT
GGATTGAGGGTCTGCCCCTGAAGGAGGATGAGATGATGCCAGAGCCTGGAAGTGAGACTCCCACAGTGGC
CTCTGAGGACCTGGCTGAGCTGCTCCATGGGGCTTTGCTGCGGAAGGGCCCAGAGATCGGCTTCTTGCCG
GGATCTGACCCAGACCCCACACTAGCCACCCCTCCAGCCGGCCAGACTCTTGCAGCACCTTCCCTGCCAC
GTGCCACTGAGCCAGGGACAGGGCCTCTGACGACAGCTGTCACCCCCAAGGGAGTCAGGGGGGCAGGCCC
CACCGCGCCAGAGCTGCTGACCCCACCCCCTGGAACTACAGCCCCGCCCCCGCCTGGCCCCGCCTCCCCA
GTCCCACCCCTCAGGCCTGAGGGAGGAGAGGAGGAAACCACCACCACCATCATCACCACAACAACTGTCA
CCACCACTGTCACCAGCCCAGTTCTGTGCAATAACAACATCTCGGAGGGCGAAGGGTTTGTGGAGTCTCC
GGACTTGGGGAGCACTGCCAGCCGCTCCGTGGAGCTCCTAGATTGCACCTACAGCATCCATGTCTACCCT
GGTTATGGCATTGAGATTCAGGTGCAGACACTCAACCTGTCTCAGGAGGAAGAACTTCTGGTGTTGGCCG
GTGGGGGTTCTCCAGGCCTGGCCCCCAGACTCCTGGCCAATTCCTCCATGCTGGGAGAAGGACAAGTGCT
GCGGAGCCCAACAAACCGGCTGCTCCTGCATTTCCAGAGTCCTCGAGTCCCAAGGGGCAATGGCTTCAGG
ATTCACTATCAGGCATACCTTCTGAGCTGCGGCTTCCCACCCCGGCCAGCCCACGGGGATGTGAGCGTGA
CAGACTTGCATCCTGGGGGCACTGCCACCTTCCACTGTGACTCAGGATACCAGCTACAGGGTGAGGAGAC
CCTCATTTGCCTCAATGGTACCCGGCCAGCCTGGACTGGTGAACCCCCTAGCTGTACAGCATCTTGTGGT
GGCACCATCCACAATGCCACACTGGGTCGCATTGTATCCCCTGAGCCTGGGGGAGCTGCAGGGCCCAACC
TCACCTGCCGCTGGGTCATTGAAGCGGCCGAGGGACGCCGGCTTCACCTACACTTTGAGAGAGTCTCACT
GGATGAGGACAATGACCGGCTGATGGTGCGCTCAGGGGGAAGCCCCCTGTCCCCTGTGATTTACGACTCT
GACATGGATGATGTCCCTGAACGCGGTCTCATCAGTGATGCCCAGTCCCTCTACGTAGAACTGCTTTCAG
AGACACCAGCCAACCCCCTGCTGCTCAGCCTCCGATTTGAAGCCTTTGAGGAGGACCGCTGCTTCCCCCC
GTTCCTGGCTCACGGCAATGTGACCACTACAGATCCTGAGTTCCACCCAGGAGCACTGGCCACCTTCTCA
TGCCTCCCAGGATATGCTCTGGAGCCACCAGGACCCCCCAATGCTATCGAATGTGTGGATCCCACCGAAC
CCCACTGGAACGACACAGAGCCAGCCTGCAAGGCCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGT
GGTACTCTCTCCCGACTGGCCCCAGAGTTACAGCCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAG
GAAGAGAAGCGCATCTTGCTCCAAGTTGAAATCTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCG
ACGGGGACGGTCCGAGCGCTCGAGTCCTGGCCCAGCTGCGAGGACCTCAGCCGCGCCGCCGCCTCCTCTC
CTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGTCCCCCAAATCCGGGCCTAGGCCAGGGT
TTCGTGTTACATTTCAAAGAGGTCCCGAGAAACGATACGTGCCCGGAGCTACCACCACCTGAGTGGGGCT
GGAGGACAGCATCCCACGGGGACCTTATCCGGGGTACAGTGCTCACCTATCAATGCGAGCCTGGCTATGA
ACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAA
AAGATCATGACTTGTGCTGACCCTGGCGAGATCACCAATGGCCATCGGACTGCCTCAGATGCTGGTTTCC
CTGTGGGCTCCCACGTCCAGTATCGCTGTCTGCCAGGGTACAGCCTGGAAGGAGCAGCTGTGCTCACCTG
CTACAGCCGGGACACAGGCACACCCAAGTGGAGTGATCGGGTCCCCAAATGCGCCTTAAAGTACGAGCCG
TGCCTGAACCCCGGTGTTCCTGAGAATGGTTACCAAACTCTGTACAAGCATCACTACCAAGCGGGCGAGT
CGCTACGCTTCTTCTGCTACGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACATGTGTACCCGGTCA
CCCCTCCCAGTGGACCAGCCAGCCCCCACTCTGCAAAGTGACCCAGACTACAGACCCATCACGGCAGCTG
GAGGGTGGTAATCTCGCTTTGGCCATCCTGTTGCCCCTGGGCTTGGTCATTGTCCTTGGCATTGGCGTTT
ACATATACTACACTAAGCTACAAGGAAAATCCCTCTTTGGCTTCTCGGGTTCTCACTCTTACAGTCCCAT
TACGGTGGAGTCAGACTTCAGCAACCCACTGTATGAAGCTGGGGATACGAGGGAGTATGAAGTTTCCATC
TGA

Translation (910 aa):
MGTPKAQHPPPSQLLLLILLSCAWIEGLPLKEDEMMPEPGSETPTVASEDLAELLHGALLRKGPEIGFLP
GSDPDPTLATPPAGQTLAAPSLPRATEPGTGPLTTAVTPKGVRGAGPTAPELLTPPPGTTAPPPPGPASP
VPPLRPEGGEEETTTTIITTTTVTTTVTSPVLCNNNISEGEGFVESPDLGSTASRSVELLDCTYSIHVYP
GYGIEIQVQTLNLSQEEELLVLAGGGSPGLAPRLLANSSMLGEGQVLRSPTNRLLLHFQSPRVPRGNGFR
IHYQAYLLSCGFPPRPAHGDVSVTDLHPGGTATFHCDSGYQLQGEETLICLNGTRPAWTGEPPSCTASCG
GTIHNATLGRIVSPEPGGAAGPNLTCRWVIEAAEGRRLHLHFERVSLDEDNDRLMVRSGGSPLSPVIYDS
DMDDVPERGLISDAQSLYVELLSETPANPLLLSLRFEAFEEDRCFPPFLAHGNVTTTDPEFHPGALATFS
CLPGYALEPPGPPNAIECVDPTEPHWNDTEPACKAMCGGELSEPAGVVLSPDWPQSYSPGQDCVWGLHVQ
EEKRILLQVEILNVREGDMLTLFDGDGPSARVLAQLRGPQPRRRLLSSGPDLTLQFQAPPGPPNPGLGQG
FVLHFKEVPRNDTCPELPPPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSDILTCQWDLSWSAAPPACQ
KIMTCADPGEITNGHRTASDAGFPVGSHVQYRCLPGYSLEGAAVLTCYSRDTGTPKWSDRVPKCALKYEP
CLNPGVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITCVPGHPSQWTSQPPLCKVTQTTDPSRQL
EGGNLALAILLPLGLVIVLGIGVYIYYTKLQGKSLFGFSGSHSYSPITVESDFSNPLYEAGDTREYEVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH