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Report for CCDS48289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48289.1 Public Mus musculus 1 Rufy4 23 108 98 CCDS HistoryNCBI Gene:435626Re-query CCDS DB by CCDS ID:48289.1Re-query CCDS DB by GeneID:435626See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127134.1 ENSMUSP00000115873.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127134.1Link to Ensembl Protein Viewer:ENSMUSP00000115873.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127134Re-query CCDS DB by Protein ID:ENSMUSP00000115873
Original member NCBI NM_001170641.1 NP_001164112.1 Updated not alive Link to Nucleotide Sequence:NM_001170641.1Link to Protein Sequence:NP_001164112.1Re-query CCDS DB by Nucleotide ID:NM_001170641Re-query CCDS DB by Protein ID:NP_001164112
Current member NCBI NM_001170641.2 NP_001164112.1 Accepted alive Link to Nucleotide Sequence:NM_001170641.2Link to Protein Sequence:NP_001164112.1Re-query CCDS DB by Nucleotide ID:NM_001170641Re-query CCDS DB by Protein ID:NP_001164112Link to BLAST:NP_001164112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164112.1 563 Q3TYX8-1 563 100% 0 0

Chromosomal Locations for CCDS 48289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74127678 74127723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74127846 74127952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74128948 74129073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74129339 74129445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74129698 74129841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74131178 74131247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74132720 74133346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74134104 74134207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74140919 74141065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74146654 74146764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74147644 74147746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCCAACAACGGGACCATCCTCAAGATCAGCAGAAGCCTGAAAAATGCAGTCTCTGCCATCCTCCAGG
GATATGGGGACGGGCAGGAGCCAGTGACAGAAACCAGCGCTGAGCTACACAGACTCTGTGGCTGCCTGGA
GCTGCTACTGCAGTTTGATCAGAAAGAGCAGAGGAGCTTCCTGGGGGCCCGGAAGGATTACTGGGACTTC
CTATTCACTGCCCTTCGACGGCACCGGGGATACACAGAGCAGATGAGCTTCATATGCTCACAGGACAAGC
TGAAGACCTCACTAGGAAAAGGTCGTGCCTTTATCCGACTCTGCCTTGCCCGAGGCCAGCTGGCTGAGTC
GATGCAGCTGTGCCTCCTGAACCCACAACTCACCAGGGAATGGTATGGCCCTCGGAGCCCTCTGTTGTGC
GCTGAGCTCCAGGAAGACATCTTGGACTCTCTCTATGCCCTCAATGGAGTTGCCTTCAACTTGGACCTGC
AGCGGCCAGACCTGGATGAAGCCTGGCCCATGTTCTCAGAGTCCCGCTGTTCCAGTCCCAGCCGGACCGG
GAAAAGAAGACCCGGGAAACCCAAAGGTTTTCCAGAGGAGGTGAGATGCTCCAGGGGAGAGCAGCTGCAG
GAACCAGACACTGGAGGAACCAGCTGTCTGCAGGATGCAACCAGAGAAGACCGCACACCTGACCTCTGTA
AACCCTTGCAGCCAAGCCATCTTCCCACCTTTCTGGAAGAGAAGAGGGAGGATTCCAGAAGCCTCAGTTG
TCCCCAGAGCACTTGGGAAACAGAAAGGGAAGGATTTCAGCTAGACCAGAAGGATGGAGGCCCAAAGCCC
AGGAAATTCCTGGAAAACTCAACAGCCAGCATCCAGCAACAGAGGAGCAGGGCTAAGGATGTTAAAATGC
AGCTGACAGGAAGGAAAGTTGAAGGAAAAGGAAGTCTGTCGGGGACAGAAGATCAGAGAACAACAGAAGG
GATCCAGAAAAGGGCAGCAGATTGGGACCTTGGCCAGGGGCTGATGGCCCCCGGTCTTCAGGGAAGAGAA
GATGCAGAGTTAGGATACAGGTGTGAGTGGAATCAGCCTGATGTTCTCAGGCAATCCTGGGTCCTGGGAA
CAAAGAAAAGTTCTCCCACAGAGAAGCCACAAGAGTGGACAGGAGTGACCAGTGGAACCATGCAGGAGGA
TGGGTCAGAAGTGCCCTTGCAGCAGGAGGTGATCAAGGACCCTGGGTATGGGCTCCAGCTGGCAAAGGAA
CAGGCCCAGTGCCAGGAGCAGCTGCGGGCACAGGAAGCAGAACTTCAGGCGCTCCAGGAGCAGCTCAGCA
GGTGTCAAAAAGAAAGAGCCCTGTTGCAAGTGAAGCTGGAGCAGAAGCAGCAGGAGGCTGAGAGGAGGGA
CGCCATGTATCAGACAGAGCTTGAAGGGCAGAGGGACCTGGTCCAGGCCATGAAAAGGAGGGTGTTGGAA
CTGATCCATGAGAAGGACCTTCAGTGGCAGAGACTCCAGCAGCTGTCTACTGTGGCCCCTGGACACTGCA
TAGGCTGCAACAAGGTCTTCAGGCGTCTGTCTCGGCGGTATCCTTGCAGGCTCTGTGGAGGCCTGGTTTG
CCACGCCTGCTCTGTAGACTACAAGAAGAGAGAGCGTTGCTGCCCAACCTGTGCCCAGCAGGAAGAAATC
CAGGACACCTGA

Translation (563 aa):
MANNGTILKISRSLKNAVSAILQGYGDGQEPVTETSAELHRLCGCLELLLQFDQKEQRSFLGARKDYWDF
LFTALRRHRGYTEQMSFICSQDKLKTSLGKGRAFIRLCLARGQLAESMQLCLLNPQLTREWYGPRSPLLC
AELQEDILDSLYALNGVAFNLDLQRPDLDEAWPMFSESRCSSPSRTGKRRPGKPKGFPEEVRCSRGEQLQ
EPDTGGTSCLQDATREDRTPDLCKPLQPSHLPTFLEEKREDSRSLSCPQSTWETEREGFQLDQKDGGPKP
RKFLENSTASIQQQRSRAKDVKMQLTGRKVEGKGSLSGTEDQRTTEGIQKRAADWDLGQGLMAPGLQGRE
DAELGYRCEWNQPDVLRQSWVLGTKKSSPTEKPQEWTGVTSGTMQEDGSEVPLQQEVIKDPGYGLQLAKE
QAQCQEQLRAQEAELQALQEQLSRCQKERALLQVKLEQKQQEAERRDAMYQTELEGQRDLVQAMKRRVLE
LIHEKDLQWQRLQQLSTVAPGHCIGCNKVFRRLSRRYPCRLCGGLVCHACSVDYKKRERCCPTCAQQEEI
QDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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