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Report for CCDS3718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3718.1 Public Homo sapiens 4 TNIP3 24 110 108 CCDS HistoryNCBI Gene:79931Re-query CCDS DB by CCDS ID:3718.1Re-query CCDS DB by GeneID:79931See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000057513.8 ENSP00000057513.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000057513.8Link to Ensembl Protein Viewer:ENSP00000057513.3Re-query CCDS DB by Nucleotide ID:ENST00000057513Re-query CCDS DB by Protein ID:ENSP00000057513
Original member Current member NCBI NM_024873.6 NP_079149.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024873.6Link to Protein Sequence:NP_079149.3Re-query CCDS DB by Nucleotide ID:NM_024873Re-query CCDS DB by Protein ID:NP_079149Link to BLAST:NP_079149.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079149.3 325 Q96KP6-1 325 100% 0 0

Chromosomal Locations for CCDS 3718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121132631 121132662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121138624 121138684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121141816 121141914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121142726 121142776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121147049 121147174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121150103 121150219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121154551 121154679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121157094 121157243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121158687 121158752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121161136 121161216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121164060 121164125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCACATTTTGTACAGGGCACATCTAGAATGATTGCCGCAGAAAGTTCTACGGAGCATAAAGAGTGTG
CTGAACCATCAACAAGAAAGAACTTGATGAATTCTCTTGAACAAAAGATAAGGTGTTTGGAAAAACAAAG
AAAAGAGCTCCTGGAAGTTAACCAGCAATGGGATCAGCAATTTAGAAGTATGAAAGAGTTATATGAAAGA
AAGGTAGCAGAGCTGAAGACGAAACTGGACGCCGCGGAAAGATTCCTCAGCACGCGGGAGAAGGATCCGC
ATCAGAGGCAGAGAAAGGACGACAGGCAGAGAGAGGACGACAGGCAGCGCGACCTGACCCGGGACCGGCT
GCAGCGGGAGGAGAAGGAAAAGGAACGCCTAAATGAAGAATTACATGAATTGAAAGAAGAGAATAAACTT
TTAAAGGGAAAAAATACTCTTGCGAACAAGGAAAAGGAACATTACGAATGTGAAATAAAACGCCTCAATA
AGGCTCTTCAGGATGCCTTGAATATCAAGTGTTCATTTTCCGAGGACTGTTTGAGGAAGTCTCGAGTGGA
ATTCTGCCATGAGGAGATGAGAACAGAAATGGAAGTTCTGAAGCAGCAGGTGCAAATATACGAAGAAGAC
TTCAAAAAGGAACGATCGGATCGAGAGAGACTTAATCAAGAGAAAGAGGAGCTACAGCAAATTAATGAAA
CTTCCCAATCCCAGTTGAACAGGCTGAATTCCCAGATAAAAGCTTGTCAGATGGAGAAAGAAAAACTAGA
AAAGCAATTAAAACAGATGTATTGCCCACCCTGTAACTGCGGCTTGGTTTTCCACCTGCAAGATCCATGG
GTACCAACAGGCCCTGGAGCTGTGCAGAAGCAACGGGAGCACCCACCAGACTATCAGTGGTATGCTCTTG
ACCAGCTTCCGCCAGATGTACAACACAAGGCAAATGGTTTATCCTCAGTAAAGAAAGTCCATCCGTAG

Translation (325 aa):
MAHFVQGTSRMIAAESSTEHKECAEPSTRKNLMNSLEQKIRCLEKQRKELLEVNQQWDQQFRSMKELYER
KVAELKTKLDAAERFLSTREKDPHQRQRKDDRQREDDRQRDLTRDRLQREEKEKERLNEELHELKEENKL
LKGKNTLANKEKEHYECEIKRLNKALQDALNIKCSFSEDCLRKSRVEFCHEEMRTEMEVLKQQVQIYEED
FKKERSDRERLNQEKEELQQINETSQSQLNRLNSQIKACQMEKEKLEKQLKQMYCPPCNCGLVFHLQDPW
VPTGPGAVQKQREHPPDYQWYALDQLPPDVQHKANGLSSVKKVHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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