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Report for CCDS12428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12428.1 Public Homo sapiens 19 GPATCH1 24 110 108 CCDS HistoryNCBI Gene:55094Re-query CCDS DB by CCDS ID:12428.1Re-query CCDS DB by GeneID:55094See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12428.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000170564.7 ENSP00000170564.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000170564.7Link to Ensembl Protein Viewer:ENSP00000170564.1Re-query CCDS DB by Nucleotide ID:ENST00000170564Re-query CCDS DB by Protein ID:ENSP00000170564
Original member Current member NCBI NM_018025.3 NP_060495.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018025.3Link to Protein Sequence:NP_060495.2Re-query CCDS DB by Nucleotide ID:NM_018025Re-query CCDS DB by Protein ID:NP_060495Link to BLAST:NP_060495.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060495.2 931 Q9BRR8 931 100% 0 0

Chromosomal Locations for CCDS 12428.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 33081194 33081266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33088134 33088268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33090780 33090865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33093359 33093519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33094172 33094269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33095762 33095820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33096207 33096446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33097755 33097902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33101495 33101574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33106695 33106899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33109717 33110016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33111724 33111902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33112486 33112613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33113767 33113903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33114253 33114419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33117825 33118041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33119010 33119117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33125105 33125202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33126588 33126733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33130130 33130160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGGCGGCGCGGGACAGTGACAGCGAAGAAGATCTGGTCAGCTATGGGACCGGGCTGGAGCCTCTGGAAG
AAGGTGAAAGACCAAAGAAACCAATCCCTCTTCAGGATCAGACTGTCAGAGATGAAAAAGGAAGGTATAA
ACGATTCCACGGGGCCTTTAGTGGAGGTTTCTCTGCTGGATACTTCAATACTGTTGGCTCAAAAGAAGGA
TGGACACCCTCTACCTTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCTTGGTCCTGAAGATT
TTATGGATGAAGAGGATCTTAGTGAATTTGGGATAGCACCTAAAGCGATTGTCACCACAGACGATTTTGC
CTCCAAAACCAAAGACAGAATACGAGAAAAGGCTAGGCAGTTGGCCGCTGCTACTGCCCCTATTCCTGGA
GCCACCCTCCTTGATGACCTCATAACGCCAGCAAAATTATCTGTTGGTTTCGAATTGCTAAGAAAAATGG
GTTGGAAAGAAGGACAAGGAGTTGGTCCTCGAGTAAAGAGACGGCCACGCCGACAGAAACCTGATCCTGG
AGTCAAAATCTATGGCTGTGCATTACCCCCTGGAAGCTCGGAAGGATCTGAGGGTGAAGATGATGACTAC
TTGCCTGATAATGTGACCTTTGCACCCAAAGATGTCACACCTGTGGATTTCACACCTAAAGATAATGTGC
ATGGTCTAGCTTACAAGGGCCTGGATCCCCACCAGGCACTGTTTGGAACTTCGGGAGAACATTTTAATCT
TTTCAGTGGTGGTTCTGAGAGAGCTGGCGATCTTGGAGAAATTGGACTGAATAAAGGAAGAAAATTGGGA
ATTTCAGGCCAGGCTTTTGGTGTAGGTGCCCTGGAAGAGGAAGATGATGATATCTATGCCACAGAAACTC
TATCCAAGTATGACACTGTTCTGAAGGACGAGGAGCCTGGAGACGGACTCTATGGCTGGACAGCACCCAG
GCAGTATAAAAACCAGAAAGAATCAGAGAAAGACCTTCGGTACGTTGGCAAAATTTTGGATGGATTTTCC
TTGGCTTCTAAACCTTTATCTTCTAAGAAAATCTATCCACCTCCAGAGCTGCCAAGAGACTATCGACCAG
TGCATTATTTCAGACCCATGGTGGCCGCCACCTCCGAGAACTCACACTTACTGCAGGTATTATCAGAGTC
AGCTGGAAAGGCAACGCCTGACCCAGGGACACACAGTAAGCACCAACTGAATGCCTCCAAACGGGCTGAG
TTGCTTGGAGAGACGCCTATTCAAGGTTCAGCTACTTCAGTGTTAGAATTTCTGTCCCAAAAAGACAAAG
AGAGAATCAAAGAAATGAAGCAGGCAACTGACCTGAAAGCAGCTCAGCTCAAGGCCAGGAGTCTGGCCCA
GAACGCTCAGAGCAGCAGAGCCCAGCTCTCCCCTGCAGCGGCTGCTGGGCACTGCTCTTGGAACATGGCA
TTAGGTGGTGGGACGGCCACCTTAAAAGCCAGCAACTTCAAGCCTTTCGCCAAAGATCCGGAAAAGCAAA
AGCGATACGACGAGTTCTTAGTACACATGAAACAGGGTCAGAAAGATGCTCTGGAACGCTGTCTGGACCC
CAGCATGACAGAGTGGGAGCGAGGCCGTGAGCGGGATGAGTTTGCCCGGGCGGCCCTGCTGTACGCATCT
TCCCATTCGACCTTGTCCTCCAGGTTCACTCACGCCAAGGAGGAGGATGACTCAGATCAGGTTGAAGTCC
CTCGAGACCAAGAGAATGATGTCGGGGATAAGCAGTCGGCTGTGAAGATGAAGATGTTTGGGAAGCTCAC
CCGAGACACGTTTGAGTGGCACCCTGACAAGCTTCTATGTAAGAGATTTAATGTCCCTGACCCTTATCCA
GATTCAACTTTAGTTGGCTTACCAAGAGTGAAGCGTGACAAGTACTCAGTCTTCAACTTTCTGACGCTCC
CAGAGACAGCTTCCTTGCCCACCACTCAAGCATCAAGTGAAAAAGTATCACAGCACCGAGGTCCCGACAA
ATCAAGAAAACCATCCAGATGGGATACCTCTAAACACGAAAAGAAAGAAGATTCCATTAGTGAATTTTTA
AGTTTGGCTAGATCAAAAGCCGAGCCACCTAAACAACAGTCCAGCCCCTTAGTAAACAAAGAGGAAGAGC
ATGCACCAGAATTATCCGCAAATCAGACCGTCAACAAAGATGTGGACGCACAGGCTGAAGGAGAAGGGAG
CCGCCCATCCATGGACTTATTCAGGGCCATCTTTGCCAGTTCCTCAGATGAAAAGTCCTCATCCTCCGAG
GATGAGCAAGGTGACAGTGAAGATGATCAGGCAGGCTCTGGGGAGGCCAACTTCCAAAGCTCCCAAGACA
CTGACTTGGGGGAAACATCATCTGTGGCTCACGCTCTTGTGCCAGCACCCCAGGAGCCGCCACCTTCCTT
CCCGATACAAAAGATGCAGATAGATGAAAGAGAAGAGTTCGGCCCGCGGCTGCCTCCCGTCTTCTGCCCC
AATGCTCGTCAGACACTTGAGGTTCCTCAAAAAGAGAAACATAAAAAGAACAAAGACAAGCACAAGGCCA
AGAAAGAGCACAGGCGGAAGAAAGAGAAGAAAAAGAAACACAGGAAGCACAAACACAAAGGCAAGCAAAA
GAATAAAAAACCAGAGAAAAGTAGTAGCTCCGAGAGTTCCGACAGCAGCGACAGCCAGAGTGACGAGGAA
ACCGCAGACGTGTCGCCCCAGGAGCTGCTGAGACGGCTGAAAAGTCTTCCACTAAGAAGGCAGTAA

Translation (931 aa):
MAARDSDSEEDLVSYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAGYFNTVGSKEG
WTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKTKDRIREKARQLAAATAPIPG
ATLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRRPRRQKPDPGVKIYGCALPPGSSEGSEGEDDDY
LPDNVTFAPKDVTPVDFTPKDNVHGLAYKGLDPHQALFGTSGEHFNLFSGGSERAGDLGEIGLNKGRKLG
ISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPRQYKNQKESEKDLRYVGKILDGFS
LASKPLSSKKIYPPPELPRDYRPVHYFRPMVAATSENSHLLQVLSESAGKATPDPGTHSKHQLNASKRAE
LLGETPIQGSATSVLEFLSQKDKERIKEMKQATDLKAAQLKARSLAQNAQSSRAQLSPAAAAGHCSWNMA
LGGGTATLKASNFKPFAKDPEKQKRYDEFLVHMKQGQKDALERCLDPSMTEWERGRERDEFARAALLYAS
SHSTLSSRFTHAKEEDDSDQVEVPRDQENDVGDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFNVPDPYP
DSTLVGLPRVKRDKYSVFNFLTLPETASLPTTQASSEKVSQHRGPDKSRKPSRWDTSKHEKKEDSISEFL
SLARSKAEPPKQQSSPLVNKEEEHAPELSANQTVNKDVDAQAEGEGSRPSMDLFRAIFASSSDEKSSSSE
DEQGDSEDDQAGSGEANFQSSQDTDLGETSSVAHALVPAPQEPPPSFPIQKMQIDEREEFGPRLPPVFCP
NARQTLEVPQKEKHKKNKDKHKAKKEHRRKKEKKKKHRKHKHKGKQKNKKPEKSSSSESSDSSDSQSDEE
TADVSPQELLRRLKSLPLRRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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