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Report for CCDS14657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14657.1 Public Homo sapiens X HTATSF1 24 110 108 CCDS HistoryNCBI Gene:27336Re-query CCDS DB by CCDS ID:14657.1Re-query CCDS DB by GeneID:27336See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14657.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000218364.5 ENSP00000218364.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000218364.5Link to Ensembl Protein Viewer:ENSP00000218364.4Re-query CCDS DB by Nucleotide ID:ENST00000218364Re-query CCDS DB by Protein ID:ENSP00000218364
Original member Current member EBI ENST00000535601.5 ENSP00000442699.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535601.5Link to Ensembl Protein Viewer:ENSP00000442699.1Re-query CCDS DB by Nucleotide ID:ENST00000535601Re-query CCDS DB by Protein ID:ENSP00000442699
Original member Current member NCBI NM_001163280.2 NP_001156752.1 Accepted alive Link to Nucleotide Sequence:NM_001163280.2Link to Protein Sequence:NP_001156752.1Re-query CCDS DB by Nucleotide ID:NM_001163280Re-query CCDS DB by Protein ID:NP_001156752Link to BLAST:NP_001156752.1
Original member Current member NCBI NM_014500.5 NP_055315.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014500.5Link to Protein Sequence:NP_055315.2Re-query CCDS DB by Nucleotide ID:NM_014500Re-query CCDS DB by Protein ID:NP_055315Link to BLAST:NP_055315.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156752.1 755 O43719 755 100% 0 0
NP_055315.2 755 O43719 755 100% 0 0

Chromosomal Locations for CCDS 14657.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136497685 136497870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136499598 136499778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136500158 136500205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136500664 136500818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136502778 136502941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136504364 136504463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136509091 136509180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136510082 136510219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136510808 136512013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2268 nt):
ATGAGCGGCACCAACTTGGATGGGAACGATGAGTTTGATGAGCAGTTGCGAATGCAAGAATTGTACGGAG
ACGGCAAGGATGGTGACACCCAGACCGATGCCGGCGGAGAACCCGATTCTCTCGGGCAGCAGCCGACGGA
CACTCCCTACGAGTGGGACCTGGACAAAAAGGCTTGGTTCCCCAAGATTACTGAAGATTTCATTGCTACA
TATCAGGCCAATTATGGCTTCTCTAACGATGGCGCATCTAGTTCTACCGCAAATGTTGAAGATGTCCATG
CTAGGACTGCAGAGGAACCTCCACAAGAAAAAGCCCCGGAACCCACTGATGCCAGAAAGAAGGGAGAAAA
AAGAAAGGCTGAGTCAGGATGGTTTCATGTTGAAGAAGACAGAAATACAAATGTATACGTGTCTGGTTTG
CCTCCAGATATTACAGTGGATGAATTTATACAACTTATGTCCAAGTTTGGCATTATTATGAGAGATCCTC
AGACAGAAGAATTTAAGGTCAAACTTTACAAAGATAATCAAGGAAATCTTAAAGGAGACGGTCTTTGCTG
TTATTTGAAAAGAGAATCTGTGGAACTTGCATTAAAACTTTTGGATGAAGATGAAATTAGAGGCTACAAA
TTACATGTTGAGGTGGCAAAGTTTCAACTGAAGGGAGAATATGATGCCTCAAAGAAGAAGAAGAAGTGCA
AAGACTATAAGAAGAAGCTGTCTATGCAACAAAAGCAGTTGGATTGGAGACCTGAGAGGCGAGCCGGACC
ATCCCGGATGCGCCATGAGCGAGTTGTCATCATCAAGAATATGTTTCATCCTATGGATTTTGAGGATGAT
CCGTTGGTGCTGAATGAGATCAGAGAAGACCTTCGAGTAGAGTGTTCGAAGTTTGGACAAATTAGGAAAC
TCCTTCTCTTTGATAGGCACCCAGATGGTGTGGCCTCTGTGTCCTTTCGGGATCCAGAGGAAGCTGATTA
TTGTATTCAGACTCTCGATGGAAGATGGTTTGGTGGCCGTCAAATCACTGCCCAGGCATGGGATGGGACT
ACAGATTATCAGGTGGAGGAAACCTCAAGAGAAAGGGAGGAAAGGCTGAGAGGATGGGAGGCTTTCCTCA
ATGCTCCTGAGGCCAACAGAGGCCTTAGGCGTTCAGATTCTGTCTCTGCTTCCGAAAGGGCAGGGCCTTC
TAGAGCAAGGCATTTTTCAGAGCACCCCAGCACATCTAAAATGAATGCTCAAGAAACTGCAACTGGAATG
GCGTTTGAAGAACCTATAGATGAGAAGAAGTTTGAAAAGACAGAAGATGGGGGAGAATTTGAAGAAGGTG
CTTCTGAAAACAATGCTAAGGAAAGTAGCCCCGAAAAAGAGGCTGAAGAAGGCTGCCCTGAAAAAGAATC
TGAAGAGGGCTGCCCCAAAAGAGGGTTTGAAGGCAGCTGCTCCCAAAAAGAGTCTGAAGAAGGCAATCCC
GTAAGAGGATCTGAAGAGGATAGTCCTAAAAAAGAGTCTAAAAAGAAGACACTCAAAAATGATTGTGAAG
AGAATGGCCTTGCAAAGGAATCTGAAGATGACCTCAACAAGGAGTCTGAAGAGGAGGTTGGCCCCACAAA
AGAGTCCGAAGAAGATGACTCAGAGAAAGAGTCTGATGAAGACTGCTCTGAAAAACAGTCTGAAGATGGC
TCCGAAAGAGAATTTGAAGAAAATGGTCTCGAGAAAGATTTGGACGAGGAAGGTTCTGAAAAGGAGCTTC
ATGAAAATGTTCTTGACAAAGAGTTAGAAGAAAATGACTCTGAAAACTCCGAATTTGAAGATGACGGCTC
TGAAAAAGTGTTAGATGAGGAAGGCTCTGAGAGAGAGTTTGACGAAGATTCAGATGAAAAGGAAGAAGAG
GAGGATACATATGAAAAAGTATTTGATGATGAGTCTGATGAGAAAGAGGATGAAGAATATGCAGATGAAA
AGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAGGTGATGCAGATGAAAAGCTGTTTGAAGAGTCAGA
TGACAAGGAAGATGAAGATGCAGATGGAAAGGAAGTTGAAGATGCTGACGAAAAGTTGTTCGAAGATGAT
GATTCCAATGAGAAGTTGTTTGATGAGGAGGAAGATTCCAGTGAGAAGTTGTTTGACGATTCTGATGAGA
GGGGGACTTTGGGTGGTTTTGGGAGTGTTGAAGAAGGGCCCCTATCCACTGGCAGCAGCTTTATTCTCAG
TAGCGATGATGATGACGATGATATTTAA

Translation (755 aa):
MSGTNLDGNDEFDEQLRMQELYGDGKDGDTQTDAGGEPDSLGQQPTDTPYEWDLDKKAWFPKITEDFIAT
YQANYGFSNDGASSSTANVEDVHARTAEEPPQEKAPEPTDARKKGEKRKAESGWFHVEEDRNTNVYVSGL
PPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVELALKLLDEDEIRGYK
LHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDFEDD
PLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT
TDYQVEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGM
AFEEPIDEKKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEGNP
VRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDG
SEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEE
EDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDD
DSNEKLFDEEEDSSEKLFDDSDERGTLGGFGSVEEGPLSTGSSFILSSDDDDDDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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