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Report for CCDS4805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4805.1 Public Homo sapiens 6 FANCE 24 110 108 CCDS HistoryNCBI Gene:2178Re-query CCDS DB by CCDS ID:4805.1Re-query CCDS DB by GeneID:2178See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4805.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229769.3 ENSP00000229769.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229769.3Link to Ensembl Protein Viewer:ENSP00000229769.2Re-query CCDS DB by Nucleotide ID:ENST00000229769Re-query CCDS DB by Protein ID:ENSP00000229769
Original member Current member NCBI NM_021922.3 NP_068741.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021922.3Link to Protein Sequence:NP_068741.1Re-query CCDS DB by Nucleotide ID:NM_021922Re-query CCDS DB by Protein ID:NP_068741Link to BLAST:NP_068741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068741.1 536 Q9HB96 536 100% 0 0

Chromosomal Locations for CCDS 4805.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35452546 35452793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35455747 35456353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35457556 35457600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35457916 35457984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35458297 35458440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35459331 35459454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35459682 35459760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35460552 35460618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35462789 35462914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35466244 35466345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGCGACACCGGACGCGGGGCTCCCTGGGGCTGAGGGCGTGGAGCCGGCGCCCTGGGCGCAGCTGGAGG
CCCCCGCCCGCCTCCTGCTGCAGGCGCTGCAGGCGGGGCCTGAGGGGGCGCGGCGCGGCCTGGGGGTGCT
CCGGGCGCTGGGCAGCCGCGGCTGGGAGCCCTTCGACTGGGGTCGCTTGCTCGAGGCCCTGTGCCGGGAG
GAGCCGGTCGTGCAGGGGCCTGACGGCCGTCTGGAGCTGAAACCACTGTTGCTGCGATTGCCCCGGATAT
GCCAGAGGAACCTGATGTCCCTGCTGATGGCCGTTCGGCCATCGCTGCCGGAAAGTGGGCTCCTCTCTGT
GCTGCAGATTGCCCAGCAGGACCTAGCCCCTGACCCAGATGCCTGGCTCCGTGCCCTGGGGGAATTGCTG
CGAAGGGATTTGGGGGTGGGGACCTCCATGGAGGGAGCTTCTCCACTGTCTGAAAGATGCCAGAGACAGC
TCCAAAGTCTATGTAGGGGGCTGGGCCTGGGGGGCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGA
AGAAGAGGAGAACAGGGACTCCCAGCAGCCTGGGAAACGCAGAAAGGACTCAGAGGAAGAGGCTGCCAGT
CCTGAGGGGAAGAGGGTCCCCAAAAGATTACGGTGTTGGGAAGAGGAAGAAGATCATGAGAAGGAGAGAC
CCGAACATAAGTCACTGGAATCCCTGGCAGATGGAGGAAGTGCATCTCCTATTAAGGACCAGCCTGTCAT
GGCAGTTAAGACTGGCGAGGACGGTTCGAATCTGGATGATGCTAAAGGTCTGGCTGAGAGTTTGGAGTTG
CCCAAAGCTATCCAGGACCAGCTTCCCAGGCTGCAGCAGCTGCTGAAGACCTTGGAGGAGGGGTTAGAGG
GATTGGAGGATGCCCCCCCAGTTGAGCTACAGCTTCTTCACGAATGTAGTCCCAGCCAGATGGACTTGCT
GTGTGCCCAGCTGCAGCTCCCTCAGCTCTCAGACCTCGGTCTCCTGCGGCTCTGCACCTGGCTGCTGGCC
CTTTCACCTGATCTCAGCCTCAGCAATGCTACTGTGCTGACCAGAAGCCTCTTTCTTGGACGGATCCTCT
CCTTGACTTCCTCAGCCTCCCGCCTGCTTACAACTGCCCTGACCTCCTTCTGTGCCAAATATACATACCC
TGTCTGCAGCGCCCTCCTTGACCCTGTGCTCCAGGCCCCAGGCACAGGTCCTGCTCAAACAGAGTTACTG
TGTTGCCTTGTGAAGATGGAGTCCCTGGAGCCAGATGCACAGGTTCTAATGCTGGGACAGATCTTGGAGC
TGCCCTGGAAGGAGGAAACTTTCTTGGTGTTGCAGTCACTCCTAGAGCGGCAGGTGGAGATGACCCCTGA
GAAGTTCAGTGTCTTAATGGAGAAGCTCTGTAAAAAGGGGCTGGCAGCCACCACCTCCATGGCCTATGCC
AAGCTCATGCTGACAGTGATGACCAAGTATCAGGCTAACATCACTGAGACCCAGAGGCTGGGCCTGGCTA
TGGCCCTAGAACCTAACACCACCTTCCTGAGGAAGTCCCTGAAGGCCGCCTTGAAACATTTGGGCCCCTG
A

Translation (536 aa):
MATPDAGLPGAEGVEPAPWAQLEAPARLLLQALQAGPEGARRGLGVLRALGSRGWEPFDWGRLLEALCRE
EPVVQGPDGRLELKPLLLRLPRICQRNLMSLLMAVRPSLPESGLLSVLQIAQQDLAPDPDAWLRALGELL
RRDLGVGTSMEGASPLSERCQRQLQSLCRGLGLGGRRLKSPQAPDPEEEENRDSQQPGKRRKDSEEEAAS
PEGKRVPKRLRCWEEEEDHEKERPEHKSLESLADGGSASPIKDQPVMAVKTGEDGSNLDDAKGLAESLEL
PKAIQDQLPRLQQLLKTLEEGLEGLEDAPPVELQLLHECSPSQMDLLCAQLQLPQLSDLGLLRLCTWLLA
LSPDLSLSNATVLTRSLFLGRILSLTSSASRLLTTALTSFCAKYTYPVCSALLDPVLQAPGTGPAQTELL
CCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYA
KLMLTVMTKYQANITETQRLGLAMALEPNTTFLRKSLKAALKHLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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