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Report for CCDS5288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5288.1 Public Homo sapiens 6 C6orf118 24 110 108 CCDS HistoryNCBI Gene:168090Re-query CCDS DB by CCDS ID:5288.1Re-query CCDS DB by GeneID:168090See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230301.9 ENSP00000230301.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230301.9Link to Ensembl Protein Viewer:ENSP00000230301.8Re-query CCDS DB by Nucleotide ID:ENST00000230301Re-query CCDS DB by Protein ID:ENSP00000230301
Original member Current member NCBI NM_144980.4 NP_659417.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144980.4Link to Protein Sequence:NP_659417.2Re-query CCDS DB by Nucleotide ID:NM_144980Re-query CCDS DB by Protein ID:NP_659417Link to BLAST:NP_659417.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659417.2 469 Q5T5N4 469 100% 0 0

Chromosomal Locations for CCDS 5288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 165280057 165280110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165281640 165281693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165289886 165290067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165293413 165293471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165297977 165298101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165299443 165299502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165300364 165300486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165301569 165302296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 165309562 165309586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCGGAGGAGCGGGAGCCTGAATTGTACCTGAAGTGGAAGCACTGCGAGACGCCAGGCGTGAAGACCC
TGTGTAATCTGAAGCACTGCGAGACGCCAGGAGTGAAGACCCTGTGTAATCTGAAGAAACTTCTGAATCG
GCTTCAGAAAGACCACCGGGAGGACGTCTACCTCTACATCTCTGGACACCTGAACCCCAACAAGCTCTAC
CAGCCTCCGGAGACGATCTTACAGCACTGGCCCAATGCCCACCGGCCCAAGGGGGAGCGCGCCTCTGAGG
TGGGAGAGCCGCCCGCAGGGAAGGTGGCGAGGATGAAGGAGGCCCTGGCCCACTTCACCATCCACACGGC
CCTGGTCCCCAGTGAGGCCCAGGACACCCCGCTGTTCAGGTACCTGAACCCCCAGGCCTCTCTTTCCCAC
ACTTCAGAGGAGGATTTCCTTCCAGTGGAGGCTGTCAGAGAGGGGAAGGAAGAAAAGAAAGGAGGCCCTC
CTGGACGGGGCCCTCCTGGATGGCGCAGGAGGGAAGAACTCCGGCTGCCCGACTTGAAGGTGCTGTGCTA
CCAGGAGGCCGGGTCCAGAGGCACCAGGGACCGGCACCACTATGTCAGCTCCTACCTGGCCGGAGCCACC
AGCGCAGACAGGTACAGGATGTTCCTGCGTTTCCAGAAGGAAGTGCTCGCCAAGCAAGATCTCCTGAAGA
ATGACTTCACTGGGAGCAAGGCGGCCGCGGGCCACGAGAGAAAGCTGCAGCAGGAGCTCCAGAAAATTTG
CACGTGCAGCCCCCAGCAGTTCAACAGACTGCACGTCTTTGGAAAAGTCTTTGAAGATATTTGTAACAGT
TCTTTGATATTTGGTGATCTCTTGAAAAAAGTTAAGGATGAATATGAACTCTACATGGCAACGCTCCTGG
AGTCCCAGCCTGCAGCACAGTACGAGGCTCTTCTGGCTCAACTCAAGGCGCTGGGGCAGAGGCCGGTGAA
GACGGCGGACATGGATCTCGCCAGGGAAGAGCTGAGGATGCTCGTGACAGCCACAAAAGCAGCCCTGGAG
CAGAATGATAGACTCAGAAGTGAACTGGAGATGGAGGTGGCATTGCTGCAGTCTGCAAAGGAACGATCAG
AATCATCTGAGAAACATATAATTGATGAAAACCGACTTACTCTTACTGAGAAGGTTGAAAAGAAGAGGTG
TGAAATACTCAGTAAGTGGGATGAGATACAAGCTCTGGAAAAAGAAATTAAAACAACTTTGGTTCATACT
GGAATTTCAGATATCACTGAGAATAGGATTAAAAGCATAGAGCATGAAGCTATACAATTGGAAACAGAAA
ATATGATTTTAAAGAAGAAAATAAAAGGGCCTTTGGAAATTTATCAAGGAATTTGTAAAATCAGAGGAAA
CAGAAGATAA

Translation (469 aa):
MAEEREPELYLKWKHCETPGVKTLCNLKHCETPGVKTLCNLKKLLNRLQKDHREDVYLYISGHLNPNKLY
QPPETILQHWPNAHRPKGERASEVGEPPAGKVARMKEALAHFTIHTALVPSEAQDTPLFRYLNPQASLSH
TSEEDFLPVEAVREGKEEKKGGPPGRGPPGWRRREELRLPDLKVLCYQEAGSRGTRDRHHYVSSYLAGAT
SADRYRMFLRFQKEVLAKQDLLKNDFTGSKAAAGHERKLQQELQKICTCSPQQFNRLHVFGKVFEDICNS
SLIFGDLLKKVKDEYELYMATLLESQPAAQYEALLAQLKALGQRPVKTADMDLAREELRMLVTATKAALE
QNDRLRSELEMEVALLQSAKERSESSEKHIIDENRLTLTEKVEKKRCEILSKWDEIQALEKEIKTTLVHT
GISDITENRIKSIEHEAIQLETENMILKKKIKGPLEIYQGICKIRGNRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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