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Report for CCDS2272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2272.1 Public Homo sapiens 2 MTX2 24 110 108 CCDS HistoryNCBI Gene:10651Re-query CCDS DB by CCDS ID:2272.1Re-query CCDS DB by GeneID:10651See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249442.11 ENSP00000249442.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249442.11Link to Ensembl Protein Viewer:ENSP00000249442.6Re-query CCDS DB by Nucleotide ID:ENST00000249442Re-query CCDS DB by Protein ID:ENSP00000249442
Original member Current member NCBI NM_006554.5 NP_006545.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006554.5Link to Protein Sequence:NP_006545.1Re-query CCDS DB by Nucleotide ID:NM_006554Re-query CCDS DB by Protein ID:NP_006545Link to BLAST:NP_006545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006545.1 263 O75431-1 263 100% 0 0

Chromosomal Locations for CCDS 2272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 176269630 176269669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176296860 176296907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176297849 176297895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176323392 176323464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176326825 176326901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176328293 176328385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176328874 176328912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176329301 176329426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176330584 176330660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176337493 176337664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGTCTCTAGTGGCGGAAGCCTTCGTCTCCCAGATTGCAGCTGCAGAACCTTGGCCTGAAAATGCTACAT
TATATCAGCAATTGAAAGGGGAGCAAATTTTACTTTCTGACAATGCAGCTTCTCTTGCAGTGCAGGCCTT
TTTGCAAATGTGTAACTTGCCTATCAAAGTAGTTTGTAGGGCAAATGCAGAATATATGTCTCCATCTGGT
AAAGTACCTTTTATTCATGTGGGAAATCAAGTAGTATCAGAACTTGGTCCAATAGTCCAATTTGTTAAAG
CCAAGGGCCATTCTCTTAGTGATGGGCTGGAGGAAGTCCAAAAAGCAGAAATGAAAGCTTACATGGAATT
AGTCAACAATATGCTGTTGACTGCAGAGCTGTATCTTCAGTGGTGTGATGAAGCTACAGTAGGGGAGATC
ACTCATGCTAGGTATGGATCTCCTTACCCTTGGCCTCTGAATCATATTTTGGCCTATCAAAAACAGTGGG
AAGTCAAACGTAAGATGAAAGCTATTGGATGGGGAAAGAAGACTCTGGACCAGGTCTTAGAGGATGTAGA
CCAGTGCTGTCAAGCTCTCTCTCAAAGACTGGGAACACAACCGTATTTCTTCAATAAGCAGCCTACTGAA
CTTGACGCACTGGTATTTGGCCATCTATACACCATTCTTACCACACAATTGACAAATGATGAACTTTCTG
AGAAGGTGAAAAACTATAGCAACCTCCTTGCTTTCTGTAGGAGAATTGAACAGCACTATTTTGAAGATCG
TGGTAAAGGCAGGCTGTCATAG

Translation (263 aa):
MSLVAEAFVSQIAAAEPWPENATLYQQLKGEQILLSDNAASLAVQAFLQMCNLPIKVVCRANAEYMSPSG
KVPFIHVGNQVVSELGPIVQFVKAKGHSLSDGLEEVQKAEMKAYMELVNNMLLTAELYLQWCDEATVGEI
THARYGSPYPWPLNHILAYQKQWEVKRKMKAIGWGKKTLDQVLEDVDQCCQALSQRLGTQPYFFNKQPTE
LDALVFGHLYTILTTQLTNDELSEKVKNYSNLLAFCRRIEQHYFEDRGKGRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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