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Report for CCDS5123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5123.1 Public Homo sapiens 6 GJA1 24 110 108 CCDS HistoryNCBI Gene:2697Re-query CCDS DB by CCDS ID:5123.1Re-query CCDS DB by GeneID:2697See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282561.4 ENSP00000282561.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282561.4Link to Ensembl Protein Viewer:ENSP00000282561.3Re-query CCDS DB by Nucleotide ID:ENST00000282561Re-query CCDS DB by Protein ID:ENSP00000282561
Original member Current member EBI ENST00000649003.1 ENSP00000497283.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649003.1Link to Ensembl Protein Viewer:ENSP00000497283.1Re-query CCDS DB by Nucleotide ID:ENST00000649003Re-query CCDS DB by Protein ID:ENSP00000497283
Original member Current member EBI ENST00000650427.1 ENSP00000497367.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650427.1Link to Ensembl Protein Viewer:ENSP00000497367.1Re-query CCDS DB by Nucleotide ID:ENST00000650427Re-query CCDS DB by Protein ID:ENSP00000497367
Original member Current member EBI ENST00000647564.1 ENSP00000497565.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647564.1Link to Ensembl Protein Viewer:ENSP00000497565.1Re-query CCDS DB by Nucleotide ID:ENST00000647564Re-query CCDS DB by Protein ID:ENSP00000497565
Original member Current member NCBI NM_000165.5 NP_000156.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000165.5Link to Protein Sequence:NP_000156.1Re-query CCDS DB by Nucleotide ID:NM_000165Re-query CCDS DB by Protein ID:NP_000156Link to BLAST:NP_000156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000156.1 382 P17302 382 100% 0 0

Chromosomal Locations for CCDS 5123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 121446848 121447996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGTGACTGGAGCGCCTTAGGCAAACTCCTTGACAAGGTTCAAGCCTACTCAACTGCTGGAGGGAAGG
TGTGGCTGTCAGTACTTTTCATTTTCCGAATCCTGCTGCTGGGGACAGCGGTTGAGTCAGCCTGGGGAGA
TGAGCAGTCTGCCTTTCGTTGTAACACTCAGCAACCTGGTTGTGAAAATGTCTGCTATGACAAGTCTTTC
CCAATCTCTCATGTGCGCTTCTGGGTCCTGCAGATCATATTTGTGTCTGTACCCACACTCTTGTACCTGG
CTCATGTGTTCTATGTGATGCGAAAGGAAGAGAAACTGAACAAGAAAGAGGAAGAACTCAAGGTTGCCCA
AACTGATGGTGTCAATGTGGACATGCACTTGAAGCAGATTGAGATAAAGAAGTTCAAGTACGGTATTGAA
GAGCATGGTAAGGTGAAAATGCGAGGGGGGTTGCTGCGAACCTACATCATCAGTATCCTCTTCAAGTCTA
TCTTTGAGGTGGCCTTCTTGCTGATCCAGTGGTACATCTATGGATTCAGCTTGAGTGCTGTTTACACTTG
CAAAAGAGATCCCTGCCCACATCAGGTGGACTGTTTCCTCTCTCGCCCCACGGAGAAAACCATCTTCATC
ATCTTCATGCTGGTGGTGTCCTTGGTGTCCCTGGCCTTGAATATCATTGAACTCTTCTATGTTTTCTTCA
AGGGCGTTAAGGATCGGGTTAAGGGAAAGAGCGACCCTTACCATGCGACCAGTGGTGCGCTGAGCCCTGC
CAAAGACTGTGGGTCTCAAAAATATGCTTATTTCAATGGCTGCTCCTCACCAACCGCTCCCCTCTCGCCT
ATGTCTCCTCCTGGGTACAAGCTGGTTACTGGCGACAGAAACAATTCTTCTTGCCGCAATTACAACAAGC
AAGCAAGTGAGCAAAACTGGGCTAATTACAGTGCAGAACAAAATCGAATGGGGCAGGCGGGAAGCACCAT
CTCTAACTCCCATGCACAGCCTTTTGATTTCCCCGATGATAACCAGAATTCTAAAAAACTAGCTGCTGGA
CATGAATTACAGCCACTAGCCATTGTGGACCAGCGACCTTCAAGCAGAGCCAGCAGTCGTGCCAGCAGCA
GACCTCGGCCTGATGACCTGGAGATCTAG

Translation (382 aa):
MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPGCENVCYDKSF
PISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDGVNVDMHLKQIEIKKFKYGIE
EHGKVKMRGGLLRTYIISILFKSIFEVAFLLIQWYIYGFSLSAVYTCKRDPCPHQVDCFLSRPTEKTIFI
IFMLVVSLVSLALNIIELFYVFFKGVKDRVKGKSDPYHATSGALSPAKDCGSQKYAYFNGCSSPTAPLSP
MSPPGYKLVTGDRNNSSCRNYNKQASEQNWANYSAEQNRMGQAGSTISNSHAQPFDFPDDNQNSKKLAAG
HELQPLAIVDQRPSSRASSRASSRPRPDDLEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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