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Report for CCDS3518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3518.1 Public Homo sapiens 4 TMPRSS11D 24 110 108 CCDS HistoryNCBI Gene:9407Re-query CCDS DB by CCDS ID:3518.1Re-query CCDS DB by GeneID:9407See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283916.11 ENSP00000283916.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283916.11Link to Ensembl Protein Viewer:ENSP00000283916.6Re-query CCDS DB by Nucleotide ID:ENST00000283916Re-query CCDS DB by Protein ID:ENSP00000283916
Original member Current member NCBI NM_004262.3 NP_004253.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004262.3Link to Protein Sequence:NP_004253.1Re-query CCDS DB by Nucleotide ID:NM_004262Re-query CCDS DB by Protein ID:NP_004253Link to BLAST:NP_004253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004253.1 418 O60235 418 100% 0 0

Chromosomal Locations for CCDS 3518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 67822337 67822498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67825732 67825874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67827261 67827520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67833204 67833381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67835083 67835121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67838172 67838329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67842558 67842625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67854068 67854186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67859557 67859678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67883926 67883933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGTATAGGCCAGCACGTGTAACTTCGACTTCAAGATTTCTGAATCCATATGTAGTATGTTTCATTGTCG
TCGCAGGGGTAGTGATCCTGGCAGTCACCATAGCTCTACTTGTTTACTTTTTAGCTTTTGATCAAAAATC
TTACTTTTATAGGAGCAGTTTTCAACTCCTAAATGTTGAATATAATAGTCAGTTAAATTCACCAGCTACA
CAGGAATACAGGACTTTGAGTGGAAGAATTGAATCTCTGATTACTAAAACATTCAAAGAATCAAATTTAA
GAAATCAGTTCATCAGAGCTCATGTTGCCAAACTGAGGCAAGATGGTAGTGGTGTGAGAGCGGATGTTGT
CATGAAATTTCAATTCACTAGAAATAACAATGGAGCATCAATGAAAAGCAGAATTGAGTCTGTTTTACGA
CAAATGCTGAATAACTCTGGAAACCTGGAAATAAACCCTTCAACTGAGATAACATCACTTACTGACCAGG
CTGCAGCAAATTGGCTTATTAATGAATGTGGGGCCGGTCCAGACCTAATAACATTGTCTGAGCAGAGAAT
CCTTGGAGGCACTGAGGCTGAGGAGGGAAGCTGGCCGTGGCAAGTCAGTCTGCGGCTCAATAATGCCCAC
CACTGTGGAGGCAGCCTGATCAATAACATGTGGATCCTGACAGCAGCTCACTGCTTCAGAAGCAACTCTA
ATCCTCGTGACTGGATTGCCACGTCTGGTATTTCCACAACATTTCCTAAACTAAGAATGAGAGTAAGAAA
TATTTTAATTCATAACAATTATAAATCTGCAACTCATGAAAATGACATTGCACTTGTGAGACTTGAGAAC
AGTGTCACCTTTACCAAAGATATCCATAGTGTGTGTCTCCCAGCTGCTACCCAGAATATTCCACCTGGCT
CTACTGCTTATGTAACAGGATGGGGCGCTCAAGAATATGCTGGCCACACAGTTCCAGAGCTAAGGCAAGG
ACAGGTCAGAATAATAAGTAATGATGTATGTAATGCACCACATAGTTATAATGGAGCCATCTTGTCTGGA
ATGCTGTGTGCTGGAGTACCTCAAGGTGGAGTGGACGCATGTCAGGGTGACTCTGGTGGCCCACTAGTAC
AAGAAGACTCACGGCGGCTTTGGTTTATTGTGGGGATAGTAAGCTGGGGAGATCAGTGTGGCCTGCCGGA
TAAGCCAGGAGTGTATACTCGAGTGACAGCCTACCTTGACTGGATTAGGCAACAAACTGGGATCTAG

Translation (418 aa):
MYRPARVTSTSRFLNPYVVCFIVVAGVVILAVTIALLVYFLAFDQKSYFYRSSFQLLNVEYNSQLNSPAT
QEYRTLSGRIESLITKTFKESNLRNQFIRAHVAKLRQDGSGVRADVVMKFQFTRNNNGASMKSRIESVLR
QMLNNSGNLEINPSTEITSLTDQAAANWLINECGAGPDLITLSEQRILGGTEAEEGSWPWQVSLRLNNAH
HCGGSLINNMWILTAAHCFRSNSNPRDWIATSGISTTFPKLRMRVRNILIHNNYKSATHENDIALVRLEN
SVTFTKDIHSVCLPAATQNIPPGSTAYVTGWGAQEYAGHTVPELRQGQVRIISNDVCNAPHSYNGAILSG
MLCAGVPQGGVDACQGDSGGPLVQEDSRRLWFIVGIVSWGDQCGLPDKPGVYTRVTAYLDWIRQQTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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