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Report for CCDS2263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2263.1 Public Homo sapiens 2 ATP5MC3 24 110 108 CCDS HistoryNCBI Gene:518Re-query CCDS DB by CCDS ID:2263.1Re-query CCDS DB by GeneID:518See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2263.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284727.9 ENSP00000284727.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284727.9Link to Ensembl Protein Viewer:ENSP00000284727.4Re-query CCDS DB by Nucleotide ID:ENST00000284727Re-query CCDS DB by Protein ID:ENSP00000284727
Original member Current member EBI ENST00000392541.3 ENSP00000376324.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392541.3Link to Ensembl Protein Viewer:ENSP00000376324.3Re-query CCDS DB by Nucleotide ID:ENST00000392541Re-query CCDS DB by Protein ID:ENSP00000376324
Original member Current member EBI ENST00000409194.5 ENSP00000387317.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409194.5Link to Ensembl Protein Viewer:ENSP00000387317.1Re-query CCDS DB by Nucleotide ID:ENST00000409194Re-query CCDS DB by Protein ID:ENSP00000387317
Original member Current member NCBI NM_001002258.5 NP_001002258.1 Accepted alive Link to Nucleotide Sequence:NM_001002258.5Link to Protein Sequence:NP_001002258.1Re-query CCDS DB by Nucleotide ID:NM_001002258Re-query CCDS DB by Protein ID:NP_001002258Link to BLAST:NP_001002258.1
Original member Current member NCBI NM_001689.5 NP_001680.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001689.5Link to Protein Sequence:NP_001680.1Re-query CCDS DB by Nucleotide ID:NM_001689Re-query CCDS DB by Protein ID:NP_001680Link to BLAST:NP_001680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002258.1 142 P48201 142 100% 0 0
NP_001680.1 142 P48201 142 100% 0 0

Chromosomal Locations for CCDS 2263.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 175178288 175178402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 175179057 175179250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 175180098 175180178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 175181355 175181393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGTTCGCCTGCGCCAAGCTCGCCTGCACCCCCTCTCTGATCCGAGCTGGATCCAGAGTTGCATACAGAC
CAATTTCTGCATCAGTGTTATCTCGACCAGAGGCTAGTAGGACTGGAGAGGGCTCTACGGTATTTAATGG
GGCCCAGAATGGTGTGTCTCAGCTAATCCAAAGGGAGTTTCAGACCAGTGCAATCAGCAGAGACATTGAT
ACTGCTGCCAAATTTATTGGTGCAGGTGCTGCAACAGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAA
CAGTCTTTGGCAGCCTTATCATTGGTTATGCCAGAAACCCTTCGCTGAAGCAGCAGCTGTTCTCATATGC
TATCCTGGGATTTGCCTTGTCTGAAGCTATGGGTCTCTTTTGTTTGATGGTTGCTTTCTTGATTTTGTTT
GCCATGTAA

Translation (142 aa):
MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREFQTSAISRDID
TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF
AM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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