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Report for CCDS10790.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10790.2 Public Homo sapiens 16 SPMIP8 24 110 108 CCDS HistoryNCBI Gene:374739Re-query CCDS DB by CCDS ID:10790.2Re-query CCDS DB by GeneID:374739See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10790.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290871.10 ENSP00000290871.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290871.10Link to Ensembl Protein Viewer:ENSP00000290871.6Re-query CCDS DB by Nucleotide ID:ENST00000290871Re-query CCDS DB by Protein ID:ENSP00000290871
Original member Current member NCBI NM_199046.3 NP_950247.3 Accepted alive Link to Nucleotide Sequence:NM_199046.3Link to Protein Sequence:NP_950247.3Re-query CCDS DB by Nucleotide ID:NM_199046Re-query CCDS DB by Protein ID:NP_950247Link to BLAST:NP_950247.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950247.3 243 Q6URK8-2 243 100% 0 0

Chromosomal Locations for CCDS 10790.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57977817 57978039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57984303 57984364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57984636 57984810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57985206 57985267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57985401 57985546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57985909 57985941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57987396 57987426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCCCGCATCATTGACCTGGTGCCCTGGGACGATGGCTCCACACATGTGTATGCCTCCCCGGCCATCC
TGCTTCCCATGGAGCGGCAGCGCAACCAGCTGGCGGGCGTGAAGCAGCAGCTCTACCACCCAGCCCTGCC
CACCCTGCGCCACATGGACAGGGACACCGTCAAGGCCTGCCTTCCTGATGAGCACTGCCAGTCCACCACC
TACTGCCGCAAAGATGAATTTGACAACGCCCATTTTACACTCCTTGGGGTCCCCAACAAACCCCTGCAGT
GTTTGGACATCACCGCCACAGGCCAGAAGCTTCGCAACAGGTACCACGAGGGAAAGCTGGCGCCCATCGC
GCCAGGCATCAACCGAGTGGACTGGCCCTGCTTCACGCGCGCCATCGAGGACTGGTCCCACTTCGTGTCC
TCGGCCGGGGAGTTCAAGCTGCCTTGCCTGAGGAAGCGAGCGGAGGGTCTCAGCGGCTACGCGGTGCGGT
ACTTGAAGCCCGACGTGACCCAGACCTGGCGGCAGGAAGCCCTGTGTGGGGCGTGGGCAGGGCGTCCGTG
CTCCCCCGACTCACCGCGCCCCTATCCCTGCTGCCCGCCTCAGTACTGCCTCAGCCAGAACCCCAGCCTG
GACCGCTACGGACAGAAGCCCCTGCCTTTCGACTCCCTGAACACTTTCCGAAGCTTCGGCTCCAGCTACA
GTCGTGTCAACTACCTGACCCCCTGGCATTAA

Translation (243 aa):
MARIIDLVPWDDGSTHVYASPAILLPMERQRNQLAGVKQQLYHPALPTLRHMDRDTVKACLPDEHCQSTT
YCRKDEFDNAHFTLLGVPNKPLQCLDITATGQKLRNRYHEGKLAPIAPGINRVDWPCFTRAIEDWSHFVS
SAGEFKLPCLRKRAEGLSGYAVRYLKPDVTQTWRQEALCGAWAGRPCSPDSPRPYPCCPPQYCLSQNPSL
DRYGQKPLPFDSLNTFRSFGSSYSRVNYLTPWH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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