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Report for CCDS35238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35238.1 Public Homo sapiens X SPACA5B 24 110 108 CCDS HistoryNCBI Gene:729201Re-query CCDS DB by CCDS ID:35238.1Re-query CCDS DB by GeneID:729201See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304270.6 ENSP00000304762.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304270.6Link to Ensembl Protein Viewer:ENSP00000304762.5Re-query CCDS DB by Nucleotide ID:ENST00000304270Re-query CCDS DB by Protein ID:ENSP00000304762
Original member Current member NCBI NM_001079900.2 NP_001073369.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079900.2Link to Protein Sequence:NP_001073369.1Re-query CCDS DB by Nucleotide ID:NM_001079900Re-query CCDS DB by Protein ID:NP_001073369Link to BLAST:NP_001073369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073369.1 159 Q96QH8 159 100% 0 0

Chromosomal Locations for CCDS 35238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48130688 48130832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48131261 48131419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48132250 48132328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48132433 48132529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGAAGGCCTGGGGCACTGTGGTAGTGACCTTGGCCACGCTGATGGTTGTCACTGTGGATGCCAAGATCT
ATGAACGCTGCGAGCTGGCGGCAAGACTGGAGAGAGCAGGGCTGAACGGCTACAAGGGCTACGGCGTTGG
AGACTGGCTGTGCATGGCTCATTATGAGAGTGGCTTTGACACCGCCTTCGTGGACCACAATCCTGATGGC
AGCAGTGAATATGGCATTTTCCAACTGAATTCTGCCTGGTGGTGTGACAATGGCATTACACCCACCAAGA
ACCTCTGCCACATGGATTGTCATGACCTGCTCAATCGCCATATTCTGGATGACATCAGGTGTGCCAAGCA
GATTGTGTCCTCACAGAATGGGCTTTCTGCCTGGACTTCTTGGAGGCTACACTGTTCTGGCCATGATTTA
TCTGAATGGCTCAAGGGGTGTGATATGCATGTGAAAATTGATCCAAAAATTCATCCATGA

Translation (159 aa):
MKAWGTVVVTLATLMVVTVDAKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHNPDG
SSEYGIFQLNSAWWCDNGITPTKNLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSAWTSWRLHCSGHDL
SEWLKGCDMHVKIDPKIHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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