NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5951.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5951.2 Public Homo sapiens 8 ZNF596 24 110 108 CCDS HistoryNCBI Gene:169270Re-query CCDS DB by CCDS ID:5951.2Re-query CCDS DB by GeneID:169270See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5951.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308811.8 ENSP00000310033.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308811.8Link to Ensembl Protein Viewer:ENSP00000310033.4Re-query CCDS DB by Nucleotide ID:ENST00000308811Re-query CCDS DB by Protein ID:ENSP00000310033
Original member Current member EBI ENST00000320552.6 ENSP00000318719.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320552.6Link to Ensembl Protein Viewer:ENSP00000318719.3Re-query CCDS DB by Nucleotide ID:ENST00000320552Re-query CCDS DB by Protein ID:ENSP00000318719
Original member Current member EBI ENST00000398612.3 ENSP00000381613.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398612.3Link to Ensembl Protein Viewer:ENSP00000381613.1Re-query CCDS DB by Nucleotide ID:ENST00000398612Re-query CCDS DB by Protein ID:ENSP00000381613
Original member Current member NCBI NM_001042415.3 NP_001035880.1 Accepted alive Link to Nucleotide Sequence:NM_001042415.3Link to Protein Sequence:NP_001035880.1Re-query CCDS DB by Nucleotide ID:NM_001042415Re-query CCDS DB by Protein ID:NP_001035880Link to BLAST:NP_001035880.1
Original member Current member NCBI NM_001042416.3 NP_001035881.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042416.3Link to Protein Sequence:NP_001035881.1Re-query CCDS DB by Nucleotide ID:NM_001042416Re-query CCDS DB by Protein ID:NP_001035881Link to BLAST:NP_001035881.1
Original member Current member NCBI NM_001287254.2 NP_001274183.1 Accepted alive Link to Nucleotide Sequence:NM_001287254.2Link to Protein Sequence:NP_001274183.1Re-query CCDS DB by Nucleotide ID:NM_001287254Re-query CCDS DB by Protein ID:NP_001274183Link to BLAST:NP_001274183.1
Original member Current member NCBI NM_001287255.1 NP_001274184.1 Accepted alive Link to Nucleotide Sequence:NM_001287255.1Link to Protein Sequence:NP_001274184.1Re-query CCDS DB by Nucleotide ID:NM_001287255Re-query CCDS DB by Protein ID:NP_001274184Link to BLAST:NP_001274184.1
Original member Current member NCBI NM_001287256.1 NP_001274185.1 Accepted alive Link to Nucleotide Sequence:NM_001287256.1Link to Protein Sequence:NP_001274185.1Re-query CCDS DB by Nucleotide ID:NM_001287256Re-query CCDS DB by Protein ID:NP_001274185Link to BLAST:NP_001274185.1
Original member Current member NCBI NM_173539.3 NP_775810.2 Accepted alive Link to Nucleotide Sequence:NM_173539.3Link to Protein Sequence:NP_775810.2Re-query CCDS DB by Nucleotide ID:NM_173539Re-query CCDS DB by Protein ID:NP_775810Link to BLAST:NP_775810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035880.1 504 Q8TC21-1 504 100% 0 0
NP_001035881.1 504 Q8TC21-1 504 100% 0 0
NP_001274183.1 504 Q8TC21-1 504 100% 0 0
NP_001274184.1 504 Q8TC21-1 504 100% 0 0
NP_001274185.1 504 Q8TC21-1 504 100% 0 0
NP_775810.2 504 Q8TC21-1 504 100% 0 0

Chromosomal Locations for CCDS 5951.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 240896 240907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 242887 243013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 243722 243805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 244619 244701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 245154 246362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCCATCACCGGATTCCATGACCTTCGAGGATATCATTGTAGACTTCACTCAAGAAGAGTGGGCCCTGC
TGGACACATCCCAGAGAAAGCTGTTTCAAGATGTGATGTTGGAGAACATCAGTCATCTGGTCTCTATTGG
CAAACAGCTCTGCAAATCAGTTGTGCTTTCCCAATTGGAGCAAGTAGAGAAACTTTCAACACAAAGAATA
AGCTTACTGCAAGGTAGAGAAGTTGGCATTAAACATCAAGAGATACCATTCATTCAACATATCTATCAGA
AGGGCACGTCCACCATCAGCACAATGAGATCTCATACTCAAGAGGATCCTTTTCTATGCAATGACTTAGG
AGAAGATTTCACTCAACATATAGCATTGACTCAAAATGTGATTACCTACATGAGAACGAAACACTTTGTA
AGCAAAAAGTTTGGGAAAATCTTCAGTGACTGGTTATCCTTTAATCAACACAAGGAAATTCACACCAAAT
GTAAATCATATGGAAGTCATCTATTTGATTATGCCTTTATCCAAAACTCTGCCCTTAGACCACACAGTGT
GACTCACACTAGAGAGATAACATTGGAATGTCGTGTGTGTGGGAAAACCTTTAGCAAAAATTCTAATCTT
AGGCGACATGAGATGATTCACACTGGAGAGAAACCACACGGATGTCATCTATGTGGGAAAGCCTTTACTC
ATTGCTCTGATCTTCGAAAACATGAGAGAACTCACACTGGAGAGAAGCCATATGGATGTCATCTATGTGG
GAAAGCCTTCAGTAAAAGTTCTAACCTTAGACGACATGAGATGATTCACACTAGAGAAAAAGCACAGATA
TGCCATCTATGTGGGAAAGCCTTCACTCATTGCTCTGACCTTAGAAAACATGAGAGAACTCACTTAGGAG
ATAAACCATATGGATGTCTCCTATGTGGGAAGGCTTTCAGTAAATGTTCTTACCTTAGACAACATGAAAG
AACTCACAATGGAGAGAAACCATATGAATGTCATCTATGTGGAAAAGCCTTCTCTCATTGTTCTCACCTT
AGACAACATGAGCGAAGTCACAATGGAGAGAAACCACATGGATGTCATCTATGTGGGAAAGCATTCACTG
AATCTTCTGTGCTTAAACGACATGAGAGAATTCACACTGGAGAGAAACCATATGAGTGCCATGTATGTGG
GAAAGCCTTCACTGAATCTTCTGACCTCAGACGACATGAGAGAACTCACACTGGAGAAAAACCATATGAA
TGCCATCTATGCGGAAAAGCCTTCAATCACTCTTCTGTCCTTAGACGACATGAGAGAACTCACACTGGAG
AGAAACCATATGAATGCAATATATGTGGTAAAGCCTTCAATAGAAGTTACAACTTTAGACTTCATAGAAG
AGTTCACACTGGAGAGAAACCATATGTATGTCCTCTATGTGGGAAAGCCTTTAGTAAATTTTTTAACCTT
AGACAACATGAGAGAACTCACACTAAAAAAGCAATGAATATGTAA

Translation (504 aa):
MPSPDSMTFEDIIVDFTQEEWALLDTSQRKLFQDVMLENISHLVSIGKQLCKSVVLSQLEQVEKLSTQRI
SLLQGREVGIKHQEIPFIQHIYQKGTSTISTMRSHTQEDPFLCNDLGEDFTQHIALTQNVITYMRTKHFV
SKKFGKIFSDWLSFNQHKEIHTKCKSYGSHLFDYAFIQNSALRPHSVTHTREITLECRVCGKTFSKNSNL
RRHEMIHTGEKPHGCHLCGKAFTHCSDLRKHERTHTGEKPYGCHLCGKAFSKSSNLRRHEMIHTREKAQI
CHLCGKAFTHCSDLRKHERTHLGDKPYGCLLCGKAFSKCSYLRQHERTHNGEKPYECHLCGKAFSHCSHL
RQHERSHNGEKPHGCHLCGKAFTESSVLKRHERIHTGEKPYECHVCGKAFTESSDLRRHERTHTGEKPYE
CHLCGKAFNHSSVLRRHERTHTGEKPYECNICGKAFNRSYNFRLHRRVHTGEKPYVCPLCGKAFSKFFNL
RQHERTHTKKAMNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH