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Report for CCDS2225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2225.1 Public Homo sapiens 2 CSRNP3 24 110 108 CCDS HistoryNCBI Gene:80034Re-query CCDS DB by CCDS ID:2225.1Re-query CCDS DB by GeneID:80034See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2225.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314499.11 ENSP00000318258.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314499.11Link to Ensembl Protein Viewer:ENSP00000318258.7Re-query CCDS DB by Nucleotide ID:ENST00000314499Re-query CCDS DB by Protein ID:ENSP00000318258
Original member Current member EBI ENST00000342316.8 ENSP00000344042.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342316.8Link to Ensembl Protein Viewer:ENSP00000344042.4Re-query CCDS DB by Nucleotide ID:ENST00000342316Re-query CCDS DB by Protein ID:ENSP00000344042
Original member Current member EBI ENST00000651982.1 ENSP00000498841.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651982.1Link to Ensembl Protein Viewer:ENSP00000498841.1Re-query CCDS DB by Nucleotide ID:ENST00000651982Re-query CCDS DB by Protein ID:ENSP00000498841
Original member Current member NCBI NM_001172173.2 NP_001165644.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172173.2Link to Protein Sequence:NP_001165644.1Re-query CCDS DB by Nucleotide ID:NM_001172173Re-query CCDS DB by Protein ID:NP_001165644Link to BLAST:NP_001165644.1
Original member Current member NCBI NM_024969.3 NP_079245.2 Accepted alive Link to Nucleotide Sequence:NM_024969.3Link to Protein Sequence:NP_079245.2Re-query CCDS DB by Nucleotide ID:NM_024969Re-query CCDS DB by Protein ID:NP_079245Link to BLAST:NP_079245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165644.1 585 Q8WYN3-1 585 100% 0 0
NP_079245.2 585 Q8WYN3-1 585 100% 0 0

Chromosomal Locations for CCDS 2225.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165595066 165595213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165657761 165658020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165676312 165676608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165678701 165679753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGAGTGGAATTTTAAAGAGGAAGTTTGAAGAAGTTGACGGCTCCTCACCCTGCTCCTCTGTGAGGGAAT
CAGATGATGAAGTTTCCAGCAGTGAAAGTGCTGACAGTGGGGACAGTGTCAATCCATCCACTTCTAGTCA
TTTTACCCCTTCCTCCATTCTCAAAAGGGAGAAACGACTGAGGACAAAGAATGTACATTTTAGTTGTGTC
ACCGTGTACTACTTCACCAGGAGGCAAGGCTTCACAAGTGTGCCCAGTCAAGGGGGAAGCACCCTGGGGA
TGTCCAGCCGCCATAACAGCGTGCGCCAGTACACTCTTGGCGAGTTTGCAAGGGAGCAGGAGAGGCTCCA
CCGGGAGATGTTGAGAGAACACCTTAGGGAGGAAAAGCTGAACTCCTTAAAACTAAAGATGACTAAGAAT
GGCACAGTAGAATCAGAAGAAGCCAGCACTCTTACACTGGATGACATTTCTGATGATGACATTGACCTGG
ACAACACAGAGGTAGATGAGTACTTCTTCCTACAACCTTTGCCAACAAAAAAACGAAGAGCTCTGCTGCG
TGCCTCTGGAGTGAAAAAGATTGACGTGGAAGAAAAGCACGAACTCCGAGCCATCCGCCTCTCACGAGAG
GACTGTGGCTGTGACTGCCGAGTGTTCTGTGATCCAGACACGTGCACCTGCAGCCTGGCTGGCATTAAGT
GCCAGGTGGATCGTATGTCTTTCCCATGCGGCTGCACTAAAGAAGGATGTAGTAACACAGCAGGTAGAAT
TGAATTTAATCCTATCCGTGTTCGGACTCACTTTTTGCACACAATAATGAAACTTGAACTGGAGAAAAAC
CGAGAGCAGCAAATCCCCACGCTGAATGGCTGCCACAGTGAGATAAGTGCTCACAGTAGTTCTATGGGCC
CTGTCGCTCACTCCGTAGAATATTCAATCGCAGACAGTTTTGAGATTGAAACTGAGCCCCAGGCTGCAGT
GCTGCACCTGCAGTCGGCTGAAGAATTAGATTGCCAAGGAGAGGAGGAGGAAGAAGAGGAGGATGGGAGC
AGCTTTTGCAGCGGAGTCACAGATTCTAGCACGCAAAGCTTGGCACCTAGTGAGTCAGACGAGGAGGAGG
AGGAAGAAGAAGAGGAAGAGGAGGAGGAGGATGACGATGATGACAAAGGAGATGGCTTCGTGGAAGGTTT
GGGCACCCATGCCGAAGTTGTCCCTCTTCCTTCAGTTCTTTGTTATTCTGATGGCACCGCCGTTCACGAA
AGCCATGCAAAGAATGCTTCTTTTTATGCCAACTCTTCAACTCTGTATTACCAAATAGATAGCCACATTC
CAGGAACTCCAAATCAGATCTCTGAGAACTATTCTGAAAGAGACACTGTCAAAAATGGTACCCTTTCGCT
GGTGCCTTACACCATGACCCCGGAGCAATTCGTTGACTATGCCCGACAAGCAGAAGAGGCCTATGGTGCC
TCCCACTACCCAGCTGCCAACCCCTCTGTAATCGTTTGCTGCTCCTCTTCCGAAAATGATAGCGGTGTGC
CCTGCAATAGTTTATATCCTGAACACAGGTCCAATCACCCTCAAGTGGAATTTCACTCATACTTGAAAGG
CCCCTCCCAAGAAGGGTTTGTCTCTGCATTGAATGGTGACAGTCACATTTCAGAGCATCCTGCTGAAAAT
TCTTTGAGCCTTGCAGAAAAGAGCATATTGCATGAAGAGTGCATCAAATCACCCGTGGTTGAGACAGTCC
CTGTTTAG

Translation (585 aa):
MSGILKRKFEEVDGSSPCSSVRESDDEVSSSESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCV
TVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKN
GTVESEEASTLTLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRE
DCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKN
REQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHLQSAEELDCQGEEEEEEEDGS
SFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKGDGFVEGLGTHAEVVPLPSVLCYSDGTAVHE
SHAKNASFYANSSTLYYQIDSHIPGTPNQISENYSERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGA
SHYPAANPSVIVCCSSSENDSGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAEN
SLSLAEKSILHEECIKSPVVETVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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