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Report for CCDS11811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11811.1 Public Homo sapiens 17 OGFOD3 24 110 108 CCDS HistoryNCBI Gene:79701Re-query CCDS DB by CCDS ID:11811.1Re-query CCDS DB by GeneID:79701See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11811.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313056.10 ENSP00000320116.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313056.10Link to Ensembl Protein Viewer:ENSP00000320116.5Re-query CCDS DB by Nucleotide ID:ENST00000313056Re-query CCDS DB by Protein ID:ENSP00000320116
Original member Current member NCBI NM_024648.3 NP_078924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024648.3Link to Protein Sequence:NP_078924.1Re-query CCDS DB by Nucleotide ID:NM_024648Re-query CCDS DB by Protein ID:NP_078924Link to BLAST:NP_078924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078924.1 319 Q6PK18-1 319 100% 0 0

Chromosomal Locations for CCDS 11811.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82392398 82392534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82398196 82398319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82403937 82404090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82405324 82405380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82406418 82406482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82409368 82409410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82411455 82411530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82415398 82415627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82418412 82418485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGCTCCTCAGCGGAGGGCCGCAACCAAGGCGCCCGAGGGCAACGGAGCGGCCGAGCGCCGGAACCGGA
GCAGCACCAAGAAGGACCGAGCCCCGCGGGAGGTGCAGAGGCTGTGGCAGAGGCCGTGGCTAAGGACCGC
GGGCCTGGGGGCTGGCTTTGTGCTCACCGCACTCCTGCTCTGGAGCAGCTTGGGGGCCGACGACGGGGTC
GCAGAGGTCCTGGCCCGCCGTGGCGAGGTCGTGGCAGGGAGATTCATCGAGGTGCCCTGCTCTGAGGACT
ACGACAGTCACCGCAGGTTCGAAGGCTGCACTCCCCGAAAGTGCGGCAGAGGTGTCACCGATGTCGTCAT
CACCAGGGAGGAAGCGGAGCGGATTCGCAGCGTAGCTGAAAAGGGGCTCTCCCTGGGAGGATCTGACGGA
GGGGCATCCATTCTGGACTTGCACTCAGGGGCCCTGTCTGTCGGGAAGCACTTTGTGAACCTGTACAGAT
ACTTCGGGGATAAAATACAGAACATCTTCTCAGAGGAGGACTTCCGGTTATACCGGGAGGTGCGGCAGAA
GGTCCAGCTCACCATTGCTGAGGCTTTTGGCATCAGCGCATCCTCGCTGCATCTGACCAAGCCCACCTTC
TTCTCCCGCATAAACAGCACGGAAGCGCGGACGGCGCACGACGAGTACTGGCATGCGCACGTGGACAAGG
TGACCTACGGCTCCTTCGACTACACCTCGCTGCTGTACCTCTCCAACTACCTGGAGGACTTCGGCGGAGG
GCGGTTCATGTTCATGGAGGAGGGTGCCAACAAGACGGTGGAGCCGAGAGCTGGTCGCGTCTCCTTCTTC
ACCTCGGGGTCCGAGAACCTACACCGCGTGGAGAAGGTCCACTGGGGCACCCGTTACGCCATCACCATCG
CCTTCAGCTGCAACCCCGACCATGGCATCGAGGACCCAGCGTTCCCGTAG

Translation (319 aa):
MAPQRRAATKAPEGNGAAERRNRSSTKKDRAPREVQRLWQRPWLRTAGLGAGFVLTALLLWSSLGADDGV
AEVLARRGEVVAGRFIEVPCSEDYDSHRRFEGCTPRKCGRGVTDVVITREEAERIRSVAEKGLSLGGSDG
GASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFRLYREVRQKVQLTIAEAFGISASSLHLTKPTF
FSRINSTEARTAHDEYWHAHVDKVTYGSFDYTSLLYLSNYLEDFGGGRFMFMEEGANKTVEPRAGRVSFF
TSGSENLHRVEKVHWGTRYAITIAFSCNPDHGIEDPAFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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