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Report for CCDS59002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59002.1 Public Homo sapiens 6 ATAT1 24 110 108 CCDS HistoryNCBI Gene:79969Re-query CCDS DB by CCDS ID:59002.1Re-query CCDS DB by GeneID:79969See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319027.9 ENSP00000324459.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000319027.9Link to Ensembl Protein Viewer:ENSP00000324459.5Re-query CCDS DB by Nucleotide ID:ENST00000319027Re-query CCDS DB by Protein ID:ENSP00000324459
Original member Current member NCBI NM_001254952.4 NP_001241881.1 Accepted alive Link to Nucleotide Sequence:NM_001254952.4Link to Protein Sequence:NP_001241881.1Re-query CCDS DB by Nucleotide ID:NM_001254952Re-query CCDS DB by Protein ID:NP_001241881Link to BLAST:NP_001241881.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001241881.1 310 Q5SQI0-6 310 100% 0 0

Chromosomal Locations for CCDS 59002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30626886 30626992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30627460 30627520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30627636 30627727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30627851 30627911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30628032 30628145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30628329 30628430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30640377 30640422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30642176 30642247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30642768 30643011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30643529 30643562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAGTTCCCGTTCGATGTGGACGCGCTGTTCCCGGAGCGGATCACGGTGCTGGACCAGCACCTGAGGC
CCCCAGCCCGCCGACCCGGAACCACAACGCCGGCCCGTGTTGATCTACAGCAGCAAATTATGACCATTAT
AGATGAACTGGGCAAGGCTTCTGCCAAGGCCCAGAATCTTTCCGCTCCTATCACTAGTGCATCAAGGATG
CAGAGTAACCGCCATGTTGTTTATATTCTCAAAGACAGTTCAGCCCGACCGGCTGGAAAAGGAGCCATTA
TTGGTTTCATCAAAGTTGGATACAAGAAGCTCTTTGTACTGGATGATCGTGAGGCTCATAATGAGGTAGA
ACCACTTTGCATCCTGGACTTTTACATCCATGAGTCTGTGCAACGCCATGGCCATGGGCGAGAACTCTTC
CAGTATATGTTGCAGAAGGAGCGAGTGGAACCGCACCAACTGGCAATTGACCGACCCTCACAGAAGCTGC
TGAAATTCCTGAATAAGCACTACAATCTGGAGACCACAGTCCCACAGGTGAACAACTTTGTGATCTTTGA
AGGCTTCTTTGCCCATCAACATCCTCCAGCAAGGAAGCTGCCACCCAAGAGAGCAGAGGGAGACATCAAG
CCATACTCCTCTAGTGACCGAGAATTTCTGAAGGTAGCTGTGGAGCCTCCTTGGCCCCTAAACAGGGCCC
CTCGCCGCGCCACACCTCCAGCCCACCCACCCCCCCGCTCCAGCAGCCTGGGAAACTCACCAGAACGAGG
TCCCCTCCGCCCCTTTGTGCCAGAGCAGGAGCTGCTGCGTTCCTTGCGCCTCTGCCCCCCACACCCTACC
GCCCGCCTTCTGTTGGCTGCTGACCCTGGGGGCAGCCCAGCTCAACGTCGTCGCACCAGCTCCCTTCCCC
GCTCTGAGGAGAGTCGATACTAA

Translation (310 aa):
MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNLSAPITSASRM
QSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELF
QYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHPPARKLPPKRAEGDIK
PYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPPHPT
ARLLLAADPGGSPAQRRRTSSLPRSEESRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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