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Report for CCDS5040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5040.1 Public Homo sapiens 6 POU3F2 24 110 108 CCDS HistoryNCBI Gene:5454Re-query CCDS DB by CCDS ID:5040.1Re-query CCDS DB by GeneID:5454See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328345.8 ENSP00000329170.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328345.8Link to Ensembl Protein Viewer:ENSP00000329170.5Re-query CCDS DB by Nucleotide ID:ENST00000328345Re-query CCDS DB by Protein ID:ENSP00000329170
Original member Current member NCBI NM_005604.4 NP_005595.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005604.4Link to Protein Sequence:NP_005595.2Re-query CCDS DB by Nucleotide ID:NM_005604Re-query CCDS DB by Protein ID:NP_005595Link to BLAST:NP_005595.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005595.2 443 P20265-1 443 100% 0 0

Chromosomal Locations for CCDS 5040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 98834874 98836205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGCGACCGCAGCGTCTAACCACTACAGCCTGCTCACCTCCAGCGCCTCCATCGTGCACGCCGAGCCGC
CCGGCGGCATGCAGCAGGGCGCGGGGGGCTACCGCGAAGCGCAGAGCCTGGTGCAGGGCGACTACGGCGC
TCTGCAGAGCAACGGACACCCGCTCAGCCACGCTCACCAGTGGATCACCGCGCTGTCCCACGGCGGCGGC
GGCGGGGGCGGTGGCGGCGGCGGGGGGGGCGGGGGCGGCGGCGGGGGCGGCGGCGACGGCTCCCCGTGGT
CCACCAGCCCCCTGGGCCAGCCGGACATCAAGCCCTCGGTGGTGGTGCAGCAGGGCGGCCGCGGAGACGA
GCTGCACGGGCCAGGCGCCCTGCAGCAGCAGCATCAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCAG
CAACAGCAGCAGCAGCAGCAGCAACAGCGGCCGCCGCATCTGGTGCACCACGCCGCTAACCACCACCCGG
GACCCGGGGCATGGCGGAGCGCGGCGGCTGCAGCGCACCTCCCACCCTCCATGGGAGCGTCCAACGGCGG
CTTGCTCTACTCGCAGCCCAGCTTCACGGTGAACGGCATGCTGGGCGCCGGCGGGCAGCCGGCCGGTCTG
CACCACCACGGCCTGCGGGACGCGCACGACGAGCCACACCATGCCGACCACCACCCGCACCCGCACTCGC
ACCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCTGGCCACCCAGGCGCGCACCACGA
CCCGCACTCGGACGAGGACACGCCGACCTCGGACGACCTGGAGCAGTTCGCCAAGCAGTTCAAGCAGCGG
CGGATCAAACTGGGATTTACCCAAGCGGACGTGGGGCTGGCTCTGGGCACCCTGTATGGCAACGTGTTCT
CGCAGACCACCATCTGCAGGTTTGAGGCCCTGCAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCTTT
GTTGAACAAGTGGTTGGAGGAGGCGGACTCGTCCTCGGGCAGCCCCACGAGCATAGACAAGATCGCAGCG
CAAGGGCGCAAGCGGAAAAAGCGGACCTCCATCGAGGTGAGCGTCAAGGGGGCTCTGGAGAGCCATTTCC
TCAAATGCCCCAAGCCCTCGGCCCAGGAGATCACCTCCCTCGCGGACAGCTTACAGCTGGAGAAGGAGGT
GGTGAGAGTTTGGTTTTGTAACAGGAGACAGAAAGAGAAAAGGATGACCCCTCCCGGAGGGACTCTGCCG
GGCGCCGAGGATGTGTACGGGGGGAGTAGGGACACTCCACCACACCACGGGGTGCAGACGCCCGTCCAGT
GA

Translation (443 aa):
MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGG
GGGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQ
QQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGL
HHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQR
RIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAA
QGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLP
GAEDVYGGSRDTPPHHGVQTPVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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