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Report for CCDS43354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43354.1 Public Homo sapiens 5 SRFBP1 24 110 108 CCDS HistoryNCBI Gene:153443Re-query CCDS DB by CCDS ID:43354.1Re-query CCDS DB by GeneID:153443See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43354.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339397.5 ENSP00000341324.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339397.5Link to Ensembl Protein Viewer:ENSP00000341324.4Re-query CCDS DB by Nucleotide ID:ENST00000339397Re-query CCDS DB by Protein ID:ENSP00000341324
Original member Current member NCBI NM_152546.3 NP_689759.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152546.3Link to Protein Sequence:NP_689759.2Re-query CCDS DB by Nucleotide ID:NM_152546Re-query CCDS DB by Protein ID:NP_689759Link to BLAST:NP_689759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689759.2 429 Q8NEF9 429 100% 0 0

Chromosomal Locations for CCDS 43354.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121962033 121962068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121974196 121974284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121975315 121975387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121994599 121994670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122019260 122019341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122020088 122020802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122022370 122022407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122026942 122027126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCTCAGCCGGGAACTCTGAACCTCAATAACGAGGTTGTGAAGATGAGAAAAGAAGTGAAGAGAATTC
GAGTTTTAGTTATCCGAAAACTTGTCAGGAGTGTTGGCCGACTGAAGTCAAAAAAGGGTACTGAAGATGC
ACTGTTAAAAAACCAAAGACGGGCGCAAAGATTGCTTGAAGAAATCCATGCCATGAAGGAATTGAAACCT
GACATAGTAACTAAATCTGCTCTTGGTGATGATATCAACTTTGAAAAAATCTTCAAAAAGCCAGATTCTA
CTGCAACTGAAAGAGCAATTGCCAGACTAGCAGTACATCCTCTTCTGAAGAAAAAGATAGATGTGCTAAA
AGCTGCTGTACAAGCCTTTAAAGAAGCAAGACAAAATGTTGCTGAAGTTGAGTCATCAAAGAATGCTTCA
GAGGACAATCATTCTGAGAATACTTTGTATTCAAATGATAATGGAAGTAATTTACAGCGTGAAGCAACTG
TCATCAGTGAGCAAAAAGTCAAAGAAACCAAAATATTGGCGAAGAAACCAATACATAATTCAAAGGAAAA
AATAGCAAAGATGGAACATGGACCTAAAGCAGTGACTATTGCAAATTCTCCATCAAAGCCTTCAGAAAAG
GATTCTGTAGTTTCCCTTGAGTCCCAGAAGACACCTGCTGACCCAAAACTGAAAACTCTAAGTCAAACCA
AAAAAAACAAAGGATCTGATAGCTCACTCTCTGGTAACAGTGATGGCGGAGAAGAATTTTGTGAAGAGGA
GAAGGAATATTTTGATGATAGCACAGAAGAAAGGTTTTACAAGCAGTCTTCCATGTCTGAAGATAGTGAT
AGCGGTGACGACTTCTTCATTGGGAAAGTCAGACGGACACGAAAGAAGGAAAGTAGTTGTCATTCTTCAG
TTAAGGAACAAAAACCACTAGAAAAAGTGTTTCTTAAAGAAGATACAGGTGAAACTCATGGGGATACAAG
AAATGACAAAATCAAGCCAAGTACAGAAACCAGAAAGTTAGAATCAGTGTTTTTCCACTCTTTATCTGGA
TCTAAAAGCTCTAGAAGAAATTTCAAAGAACAGGCTCCAAAAACAAGATCCCTAGATTTTCCACAGAATG
AGCCTCAGATCAAGAATCAGTTTAATAAGAAGCTATCAGGAAGACTTGAAAATACAAAACAGCAATTGCA
GCTGCCTCTTCATCCTTCATGGGAAGCAAGCAGAAGGCGAAAAGAACAGCAATCTAATATTGCTGTGTTT
CAGGGGAAAAAAATTACGTTTGATGATTGA

Translation (429 aa):
MAQPGTLNLNNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRRAQRLLEEIHAMKELKP
DIVTKSALGDDINFEKIFKKPDSTATERAIARLAVHPLLKKKIDVLKAAVQAFKEARQNVAEVESSKNAS
EDNHSENTLYSNDNGSNLQREATVISEQKVKETKILAKKPIHNSKEKIAKMEHGPKAVTIANSPSKPSEK
DSVVSLESQKTPADPKLKTLSQTKKNKGSDSSLSGNSDGGEEFCEEEKEYFDDSTEERFYKQSSMSEDSD
SGDDFFIGKVRRTRKKESSCHSSVKEQKPLEKVFLKEDTGETHGDTRNDKIKPSTETRKLESVFFHSLSG
SKSSRRNFKEQAPKTRSLDFPQNEPQIKNQFNKKLSGRLENTKQQLQLPLHPSWEASRRRKEQQSNIAVF
QGKKITFDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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