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Report for CCDS3368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3368.1 Public Homo sapiens 4 RGS12 24 110 108 CCDS HistoryNCBI Gene:6002Re-query CCDS DB by CCDS ID:3368.1Re-query CCDS DB by GeneID:6002See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3368.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338806.4 ENSP00000342133.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338806.4Link to Ensembl Protein Viewer:ENSP00000342133.4Re-query CCDS DB by Nucleotide ID:ENST00000338806Re-query CCDS DB by Protein ID:ENSP00000342133
Original member Current member NCBI NM_198227.2 NP_937870.1 Accepted alive Link to Nucleotide Sequence:NM_198227.2Link to Protein Sequence:NP_937870.1Re-query CCDS DB by Nucleotide ID:NM_198227Re-query CCDS DB by Protein ID:NP_937870Link to BLAST:NP_937870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937870.1 799 O14924-3 799 100% 0 0

Chromosomal Locations for CCDS 3368.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3370268 3370321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3386416 3386437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3414072 3414241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3414752 3414844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3415978 3416121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3416913 3417092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3417388 3417541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3420642 3420718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3422376 3422570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3422905 3422978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3423515 3423641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3425464 3425560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3428090 3428169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3428558 3428711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3430407 3430955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3439455 3439684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGAATTTGGGGAAAGAGTTGTCAAACGAAACCCATGTTTCTAATGACCAGCAGTCTGCAACTGTGTCTG
ATGGCGAGTTGACGGGCGCCGACCTGAAGGACTGCGTCAGCAACAACAGCCTGAGCAGCAATGCCAGCCT
CCCCAGCGTGCAGAGCTGCCGGCGCCTGCGTGAGAGGAGGGTCGCCAGCTGGGCCGTGTCCTTTGAGCGC
CTGCTGCAGGACCCCGTCGGTGTCCGCTACTTCTCTGATTTTCTAAGGAAAGAATTCAGTGAAGAAAACA
TTTTATTCTGGCAGGCCTGTGAATATTTTAATCATGTTCCTGCACATGACAAAAAGGAGCTTTCCTACAG
GGCCCGGGAGATTTTCAGTAAGTTTCTCTGCAGCAAAGCCACCACCCCGGTCAACATCGACAGCCAGGCC
CAGCTAGCAGACGACGTCCTCCGCGCACCTCACCCAGACATGTTCAAGGAGCAGCAGCTGCAGATCTTCA
ATCTCATGAAGTTTGATAGCTACACTCGCTTTCTGAAGTCCCCGCTGTACCAGGAATGCATCCTGGCGGA
AGTGGAGGGCCGTGCACTCCCGGACTCGCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCGGT
TCAGACCACTCCAGTGTGTCCACGCCAAAAAAGTTAAGTGGAAAATCAAAATCCGGCCGATCCCTGAATG
AAGAGCTGGGGGATGAGGACAGCGAGAAGAAGCGGAAAGGCGCGTTTTTCTCGTGGTCGCGGACCAGGAG
CACCGGGAGGTCCCAGAAAAAGAGGGAGCACGGGGACCACGCAGACGACGCCCTGCATGCCAATGGAGGC
CTGTGTCGCCGAGAGTCGCAGGGCTCTGTGTCCTCTGCGGGGAGCCTGGACCTGTCGGAGGCCTGCAGGA
CTTTGGCACCCGAGAAGGACAAGGCCACCAAGCACTGCTGCATTCATCTCCCGGATGGGACATCCTGCGT
GGTGGCTGTCAAGGCGGGCTTCTCCATCAAAGACATCCTGTCCGGACTCTGTGAGCGGCATGGCATCAAC
GGGGCGGCCGCGGACCTCTTCCTGGTGGGCGGGGACAAGCCTCTGGTGCTGCACCAAGACAGTAGCATCT
TGGAGTCAAGGGACCTGCGCCTAGAAAAGCGCACCTTGTTTCGGCTGGATCTTGTTCCGATTAACCGGTC
AGTGGGACTCAAGGCCAAGCCCACCAAGCCCGTCACGGAGGTGCTGCGGCCCGTGGTGGCCAGATACGGC
CTGGACCTCAGTGGCCTGCTGGTGAGGCTGAGTGGAGAGAAGGAGCCCCTGGACCTTGGCGCCCCTATAT
CGAGTCTGGACGGACAGCGGGTTGTCTTGGAGGAGAAGGATCCTTCCAGAGGAAAGGCATCCGCAGATAA
ACAGAAAGGTGTGCCAGTGAAACAGAACACAGCTGTAAATTCCAGCTCCAGAAACCACTCGGCTACGGGA
GAGGAAAGAACACTAGGCAAGTCTAATTCTATTAAAATAAAAGGAGAAAATGGAAAAAATGCTAGGGATC
CCCGGCTTTCAAAGAGAGAAGAATCTATTGCAAAGATTGGGAAAAAAAAATATCAGAAAATTAATTTGGA
CGAAGCAGAGGAGTTTTTTGAGCTTATTTCCAAAGCTCAGAGCAACAGAGCAGATGACCAACGTGGGCTG
CTAAGGAAGGAAGACCTGGTGTTGCCAGAGTTCCTCCGTTTACCTCCTGGTTCCACAGAACTCACCCTCC
CCACTCCAGCTGCTGTGGCCAAGGGCTTTAGCAAGAGAAGCGCCACAGGCAACGGCCGGGAGAGCGCCTC
CCAGCCTGGCGAGCAGTGGGAGCCAGTCCAGGAGAGCAGCGACAGCCCGTCCACCAGCCCGGGCTCAGCC
TCCAGCCCCCCTGGACCTCCTGGGACGACCCCCCCCGGGCAGAAGTCTCCCAGCGGGCCCTTCTGCACTC
CCCAGTCCCCCGTCTCCCTCGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGCAGTCTCAGGAAGTGGA
GGCCGGGGGCATCCAGACGGTGGAGGATGAGCACGTGGCCGAGCTGACCCTGATGGGGGAGGGGGACATC
AGCAGCCCCAACAGCACCTTGCTGCCGCCGCCCTCCACCCCCCAGGAAGTGCCAGGACCTTCCAGACCAG
GAAGTGGGACCCATGGCAGCCGAGACCTCCCAGTCAACAGAATCATCGATGTGGATCTTGTAACTGGCTC
GGCGCCCGGGCGGGATGGTGGCATAGCGGGGGCACAGGCTGGCCCTGGGAGGTCGCAGGCCAGTGGTGGG
CCTCCTACATCAGACCTCCCTGGCTTGGGCCCCGTCCCGGGTGAGCCTGCTAAGCCCAAGACCAGCGCTC
ACCACGCCACCTTCGTCTGA

Translation (799 aa):
MNLGKELSNETHVSNDQQSATVSDGELTGADLKDCVSNNSLSSNASLPSVQSCRRLRERRVASWAVSFER
LLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLCSKATTPVNIDSQA
QLADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAEVEGRALPDSQQVPSSPASKHSLG
SDHSSVSTPKKLSGKSKSGRSLNEELGDEDSEKKRKGAFFSWSRTRSTGRSQKKREHGDHADDALHANGG
LCRRESQGSVSSAGSLDLSEACRTLAPEKDKATKHCCIHLPDGTSCVVAVKAGFSIKDILSGLCERHGIN
GAAADLFLVGGDKPLVLHQDSSILESRDLRLEKRTLFRLDLVPINRSVGLKAKPTKPVTEVLRPVVARYG
LDLSGLLVRLSGEKEPLDLGAPISSLDGQRVVLEEKDPSRGKASADKQKGVPVKQNTAVNSSSRNHSATG
EERTLGKSNSIKIKGENGKNARDPRLSKREESIAKIGKKKYQKINLDEAEEFFELISKAQSNRADDQRGL
LRKEDLVLPEFLRLPPGSTELTLPTPAAVAKGFSKRSATGNGRESASQPGEQWEPVQESSDSPSTSPGSA
SSPPGPPGTTPPGQKSPSGPFCTPQSPVSLAQEGTAQIWKRQSQEVEAGGIQTVEDEHVAELTLMGEGDI
SSPNSTLLPPPSTPQEVPGPSRPGSGTHGSRDLPVNRIIDVDLVTGSAPGRDGGIAGAQAGPGRSQASGG
PPTSDLPGLGPVPGEPAKPKTSAHHATFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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