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Report for CCDS6062.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6062.2 Public Homo sapiens 8 CCDC25 24 110 108 CCDS HistoryNCBI Gene:55246Re-query CCDS DB by CCDS ID:6062.2Re-query CCDS DB by GeneID:55246See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6062.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356537.9 ENSP00000348933.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356537.9Link to Ensembl Protein Viewer:ENSP00000348933.4Re-query CCDS DB by Nucleotide ID:ENST00000356537Re-query CCDS DB by Protein ID:ENSP00000348933
Original member Current member NCBI NM_018246.3 NP_060716.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018246.3Link to Protein Sequence:NP_060716.2Re-query CCDS DB by Nucleotide ID:NM_018246Re-query CCDS DB by Protein ID:NP_060716Link to BLAST:NP_060716.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060716.2 208 Q86WR0-1 208 100% 0 0

Chromosomal Locations for CCDS 6062.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27736216 27736245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27740472 27740517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27748077 27748279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27748495 27748598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27752512 27752587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27756719 27756770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27762419 27762458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27765204 27765251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27772513 27772540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGTGTTCTACTTCACCAGCAGCAGCGTTAATTCATCTGCCTACACTATTTACATGGGAAAAGATAAAT
ATGAAAATGAAGATCTGATCAAGCATGGCTGGCCTGAAGATATCTGGTTTCATGTGGACAAACTCTCTTC
GGCTCATGTATACCTTCGATTACATAAGGGAGAGAATATAGAAGACATCCCAAAGGAAGTGCTGATGGAC
TGTGCCCACCTTGTGAAGGCCAATAGCATTCAAGGCTGCAAGATGAACAACGTTAATGTGGTATATACGC
CGTGGTCTAACCTGAAGAAAACAGCTGACATGGATGTGGGGCAGATAGGCTTTCACAGGCAGAAGGATGT
AAAAATTGTGACAGTGGAGAAGAAAGTAAATGAGATCCTGAACCGATTAGAAAAGACCAAAGTCGAGCGG
TTCCCAGACCTAGCAGCAGAGAAAGAATGCAGAGATCGTGAAGAGAGGAATGAGAAAAAAGCCCAAATTC
AGGAAATGAAAAAGAGAGAAAAAGAAGAAATGAAGAAGAAGAGGGAAATGGATGAACTTAGGAGCTATTC
ATCACTAATGAAAGTTGAAAATATGTCTTCAAATCAGGATGGCAATGATTCAGATGAATTCATGTAA

Translation (208 aa):
MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMD
CAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVER
FPDLAAEKECRDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQDGNDSDEFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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