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Report for CCDS13824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13824.1 Public Homo sapiens 22 SUSD2 24 110 108 CCDS HistoryNCBI Gene:56241Re-query CCDS DB by CCDS ID:13824.1Re-query CCDS DB by GeneID:56241See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358321.4 ENSP00000351075.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358321.4Link to Ensembl Protein Viewer:ENSP00000351075.3Re-query CCDS DB by Nucleotide ID:ENST00000358321Re-query CCDS DB by Protein ID:ENSP00000351075
Original member Current member NCBI NM_019601.4 NP_062547.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019601.4Link to Protein Sequence:NP_062547.1Re-query CCDS DB by Nucleotide ID:NM_019601Re-query CCDS DB by Protein ID:NP_062547Link to BLAST:NP_062547.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062547.1 822 Q9UGT4 822 100% 0 0

Chromosomal Locations for CCDS 13824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 24181520 24181595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24183057 24183267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24183495 24183646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24184136 24184303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24184766 24184940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24185094 24185295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24185486 24185571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24185661 24185929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24186016 24186159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24186257 24186415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24187202 24187450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24187571 24187843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24187959 24188135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24188225 24188327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24188412 24188436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGAAGCCAGCCCTCCTGCCCTGGGCCCTGCTGCTGCTGGCGACAGCCCTCGGCCCGGGCCCCGGACCCA
CAGCAGATGCCCAAGAGAGCTGCTCCATGCGCTGTGGCGCCCTGGACGGGCCATGTTCCTGCCACCCGAC
GTGCTCTGGCCTTGGCACCTGCTGCTTGGATTTCCGGGACTTCTGCCTGGAGATATTGCCCTACTCAGGA
TCCATGATGGGCGGCAAGGACTTTGTGGTGCGGCACTTCAAGATGTCCAGCCCCACAGACGCCAGTGTGA
TCTGCAGGTTTAAGGACAGCATCCAGACCCTCGGCCATGTGGACTCCTCCGGGCAAGTGCACTGTGTGTC
ACCTCTGCTCTATGAGAGCGGCCGCATCCCCTTCACTGTGTCACTGGACAACGGCCACTCCTTCCCTCGT
GCGGGCACCTGGCTGGCTGTGCACCCCAACAAAGTGTCAATGATGGAGAAGAGCGAGTTGGTGAACGAGA
CGCGTTGGCAATACTACGGCACCGCCAACACCTCAGGCAACCTCAGCCTGACCTGGCATGTCAAGTCGCT
GCCCACGCAGACCATCACCATCGAACTGTGGGGCTACGAGGAGACAGGAATGCCCTACTCACAGGAGTGG
ACTGCAAAGTGGTCGTACCTGTACCCCCTGGCCACACACATCCCCAACTCCGGCTCTTTCACTTTCACCC
CAAAACCTGCTCCTCCCAGCTACCAGAGATGGCGAGTGGGTGCACTTCGGATCATCGACAGCAAAAATTA
CGCAGGGCAGAAGGACGTGCAGGCGCTCTGGACCAACGACCACGCACTGGCCTGGCACCTGAGCGATGAC
TTCCGAGAGGACCCTGTGGCCTGGGCACGAACTCAGTGCCAGGCCTGGGAGGAGCTGGAGGATCAGCTGC
CCAACTTCCTGGAGGAGCTGCCGGACTGCCCCTGCACCCTGACCCAGGCCCGGGCTGACTCCGGCCGCTT
CTTCACGGACTACGGCTGTGACATGGAGCAGGGCAGCGTGTGCACCTACCACCCCGGGGCCGTGCACTGT
GTGCGTTCTGTGCAGGCCAGCCTCCGGTACGGCTCAGGTCAGCAGTGCTGCTACACAGCGGACGGGACGC
AGCTCCTGACAGCTGACTCCAGCGGCGGCAGCACTCCCGACCGCGGCCATGACTGGGGCGCACCCCCGTT
CCGCACGCCACCCCGAGTGCCCAGCATGTCCCACTGGCTCTACGATGTCCTCAGCTTCTATTACTGCTGC
CTCTGGGCACCCGACTGCCCCCGCTACATGCAACGGCGGCCCTCCAATGACTGCCGCAACTACCGGCCCC
CAAGACTGGCCTCCGCCTTCGGAGACCCACACTTTGTGACCTTCGACGGCACCAACTTCACATTCAATGG
GCGCGGAGAGTACGTGCTGCTGGAGGCAGCGCTGACCGACCTGAGGGTGCAGGCGCGGGCCCAGCCCGGG
ACGATGTCCAACGGCACGGAGACCCGTGGCACTGGGCTGACCGCAGTGGCCGTCCAGGAGGGCAACTCAG
ATGTGGTGGAAGTCAGGCTGGCCAACAGGACCGGAGGTCTGGAGGTGCTGCTGAACCAGGAGGTGCTGAG
CTTCACCGAGCAGAGCTGGATGGACCTGAAAGGAATGTTCCTGTCGGTGGCTGCCGGGGACAGGGTCTCC
ATCATGCTGGCATCAGGGGCCGGCCTGGAGGTCAGCGTGCAGGGCCCGTTCCTGAGTGTGTCCGTCCTGC
TGCCTGAGAAGTTCCTCACCCACACCCACGGCCTCCTCGGGACACTCAACAACGACCCCACCGACGACTT
CACCCTGCACAGCGGGCGCGTCCTGCCCCCAGGCACCAGTCCCCAGGAGCTGTTCCTGTTTGGGGCCAAC
TGGACCGTGCACAATGCGTCCTCCCTGCTCACCTACGATTCCTGGTTCCTGGTCCACAACTTCCTGTACC
AACCCAAGCACGACCCCACCTTCGAGCCCCTCTTCCCCAGTGAGACCACCCTCAACCCCAGCCTGGCACA
AGAGGCAGCCAAACTATGTGGGGACGATCATTTCTGCAACTTTGATGTGGCAGCCACTGGGAGCCTGAGC
ACGGGCACTGCCACTCGGGTGGCCCACCAGCTGCACCAGCGTCGCATGCAGAGCCTGCAGCCAGTGGTGT
CCTGTGGCTGGCTGGCCCCACCTCCCAACGGACAAAAGGAGGGCAACAGGTACCTGGCGGGTTCCACCAT
CTACTTCCACTGTGACAACGGCTACAGCCTGGCCGGGGCAGAGACCAGCACCTGCCAGGCTGACGGCACC
TGGTCCTCACCCACCCCGAAGTGCCAGCCAGGACGCAGCTACGCGGTGCTGTTGGGCATCATCTTTGGGG
GCCTCGCGGTGGTGGCGGCGGTTGCGCTCGTCTATGTGCTGCTGCGCCGCAGGAAGGGCAACACGCACGT
CTGGGGTGCACAGCCCTGA

Translation (822 aa):
MKPALLPWALLLLATALGPGPGPTADAQESCSMRCGALDGPCSCHPTCSGLGTCCLDFRDFCLEILPYSG
SMMGGKDFVVRHFKMSSPTDASVICRFKDSIQTLGHVDSSGQVHCVSPLLYESGRIPFTVSLDNGHSFPR
AGTWLAVHPNKVSMMEKSELVNETRWQYYGTANTSGNLSLTWHVKSLPTQTITIELWGYEETGMPYSQEW
TAKWSYLYPLATHIPNSGSFTFTPKPAPPSYQRWRVGALRIIDSKNYAGQKDVQALWTNDHALAWHLSDD
FREDPVAWARTQCQAWEELEDQLPNFLEELPDCPCTLTQARADSGRFFTDYGCDMEQGSVCTYHPGAVHC
VRSVQASLRYGSGQQCCYTADGTQLLTADSSGGSTPDRGHDWGAPPFRTPPRVPSMSHWLYDVLSFYYCC
LWAPDCPRYMQRRPSNDCRNYRPPRLASAFGDPHFVTFDGTNFTFNGRGEYVLLEAALTDLRVQARAQPG
TMSNGTETRGTGLTAVAVQEGNSDVVEVRLANRTGGLEVLLNQEVLSFTEQSWMDLKGMFLSVAAGDRVS
IMLASGAGLEVSVQGPFLSVSVLLPEKFLTHTHGLLGTLNNDPTDDFTLHSGRVLPPGTSPQELFLFGAN
WTVHNASSLLTYDSWFLVHNFLYQPKHDPTFEPLFPSETTLNPSLAQEAAKLCGDDHFCNFDVAATGSLS
TGTATRVAHQLHQRRMQSLQPVVSCGWLAPPPNGQKEGNRYLAGSTIYFHCDNGYSLAGAETSTCQADGT
WSSPTPKCQPGRSYAVLLGIIFGGLAVVAAVALVYVLLRRRKGNTHVWGAQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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