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Report for CCDS43900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43900.1 Public Homo sapiens 9 GLT6D1 24 110 108 CCDS HistoryNCBI Gene:360203Re-query CCDS DB by CCDS ID:43900.1Re-query CCDS DB by GeneID:360203See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371763.6 ENSP00000360829.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371763.6Link to Ensembl Protein Viewer:ENSP00000360829.1Re-query CCDS DB by Nucleotide ID:ENST00000371763Re-query CCDS DB by Protein ID:ENSP00000360829
Original member Current member NCBI NM_182974.3 NP_892019.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182974.3Link to Protein Sequence:NP_892019.2Re-query CCDS DB by Nucleotide ID:NM_182974Re-query CCDS DB by Protein ID:NP_892019Link to BLAST:NP_892019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_892019.2 276 Q7Z4J2 276 100% 0 0

Chromosomal Locations for CCDS 43900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135624097 135624670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135626069 135626206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135631431 135631478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135639117 135639187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGAATTCTAAAAGAATGCTGTTATTGGTTTTATTTGCTTTTTCACTGATGTTGGTTGAGCGTTATTTCA
GGAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAGAAAACGCCCTGATGTTATAAC
GAAAACAGACTGGCTCGCTCCTGTCCTATGGGAAGGGACTTTCGACAGGCGGGTCCTGGAAAAACATTAC
AGAAGGCGGAATATCACTGTGGGCCTGGCCGTCTTTGCTACTGGCAGGTTTGCAGAGGAGTACCTGAGGC
CGTTCCTACACTCCGCAAATAAGCACTTCATGACAGGCTACCGAGTGATCTTCTACATCATGGTGGACGC
CTTCTTCAAGCTGCCTGACATAGAGCCCAGTCCTCTTCGAACGTTCAAAGCATTTAAAGTGGGCACCGAG
AGGTGGTGGCTCGATGGCCCCCTGGTGCATGTGAAGAGCCTGGGTGAACACATCGCCAGTCACATCCAGG
ACGAGGTGGACTTCCTCTTCAGCATGGCTGCCAACCAGGTCTTCCAGAATGAGTTCGGGGTGGAGACCCT
GGGCCCGTTGGTGGCCCAGCTCCACGCCTGGTGGTATTTCAGAAACACCAAGAACTTCCCTTATGAGAGG
AGGCCGACCTCAGCAGCTTGCATCCCGTTTGGACAGGGAGATTTCTATTATGGCAACTTGATGGTTGGTG
GCACACCCCATAATATTTTAGACTTCATCAAAGAATATCTGAACGGAGTTATTCATGACATCAAAAATGG
ACTCAATAGCACTTATGAAAAGCACCTTAACAAATATTTTTACCTCAATAAACCCACCTAG

Translation (276 aa):
MNSKRMLLLVLFAFSLMLVERYFRNHQVEELRLSDWFHPRKRPDVITKTDWLAPVLWEGTFDRRVLEKHY
RRRNITVGLAVFATGRFAEEYLRPFLHSANKHFMTGYRVIFYIMVDAFFKLPDIEPSPLRTFKAFKVGTE
RWWLDGPLVHVKSLGEHIASHIQDEVDFLFSMAANQVFQNEFGVETLGPLVAQLHAWWYFRNTKNFPYER
RPTSAACIPFGQGDFYYGNLMVGGTPHNILDFIKEYLNGVIHDIKNGLNSTYEKHLNKYFYLNKPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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