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Report for CCDS7201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7201.1 Public Homo sapiens 10 CSGALNACT2 24 110 108 CCDS HistoryNCBI Gene:55454Re-query CCDS DB by CCDS ID:7201.1Re-query CCDS DB by GeneID:55454See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374466.4 ENSP00000363590.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374466.4Link to Ensembl Protein Viewer:ENSP00000363590.3Re-query CCDS DB by Nucleotide ID:ENST00000374466Re-query CCDS DB by Protein ID:ENSP00000363590
Original member Current member NCBI NM_018590.5 NP_061060.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018590.5Link to Protein Sequence:NP_061060.3Re-query CCDS DB by Nucleotide ID:NM_018590Re-query CCDS DB by Protein ID:NP_061060Link to BLAST:NP_061060.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061060.3 542 Q8N6G5-1 542 100% 0 0

Chromosomal Locations for CCDS 7201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43155150 43155810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43158715 43158931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43160494 43160595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43163866 43164044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43167004 43167098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43175951 43176032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43183250 43183542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGCCTAGAAGAGGACTGATTCTTCACACCCGGACCCACTGGTTGCTGTTGGGCCTTGCTTTGCTCTGCA
GTTTGGTATTATTTATGTACCTCCTGGAATGTGCCCCCCAGACTGATGGAAATGCATCTCTTCCTGGTGT
TGTTGGGGAAAATTATGGTAAAGAGTATTATCAAGCCCTCCTACAGGAACAAGAAGAACATTATCAGACC
AGGGCAACCAGTCTGAAACGCCAAATTGCCCAACTAAAACAAGAATTACAAGAAATGAGTGAGAAGATGC
GGTCACTGCAAGAAAGAAGGAATGTAGGGGCTAATGGCATAGGCTATCAGAGCAACAAAGAGCAAGCACC
TAGTGATCTTTTAGAGTTTCTTCATTCCCAAATTGACAAAGCTGAAGTTAGCATAGGGGCCAAACTACCC
AGTGAGTATGGGGTCATTCCCTTTGAAAGTTTTACCTTAATGAAAGTATTTCAATTGGAAATGGGTCTCA
CTCGCCATCCTGAAGAAAAGCCAGTTAGAAAAGACAAACGAGATGAATTGGTGGAAGTTATTGAAGCGGG
CTTGGAGGTCATTAATAATCCTGATGAAGATGATGAACAAGAAGATGAGGAGGGTCCCCTTGGAGAGAAA
CTGATATTTAATGAAAATGACTTCGTAGAAGGTTATTATCGCACTGAGAGAGATAAGGGCACACAGTATG
AACTCTTTTTTAAGAAAGCAGACCTTACGGAATATAGACATGTGACCCTCTTCCGCCCTTTTGGACCTCT
CATGAAAGTGAAGAGTGAGATGATTGACATCACTAGATCAATTATTAATATCATTGTGCCACTTGCTGAA
AGAACTGAAGCATTTGTACAATTTATGCAGAACTTCAGGGATGTTTGTATTCATCAAGACAAGAAGATTC
ATCTCACAGTGGTGTATTTTGGTAAAGAAGGACTGTCTAAAGTCAAGTCTATCCTAGAATCTGTCACCAG
TGAGTCTAATTTTCACAATTACACCTTGGTCTCATTGAATGAAGAATTTAATCGTGGACGAGGACTAAAT
GTGGGTGCCCGAGCTTGGGACAAGGGAGAGGTCTTGATGTTTTTCTGTGATGTTGATATCTATTTCTCAG
CCGAATTCCTTAACAGCTGCCGGTTAAATGCTGAGCCAGGTAAGAAGGTGTTTTACCCTGTGGTGTTCAG
TCTTTACAATCCTGCCATTGTTTATGCCAACCAGGAAGTGCCACCACCTGTGGAGCAGCAGCTGGTTCAC
AAAAAGGATTCTGGCTTTTGGCGAGATTTTGGCTTTGGAATGACTTGTCAGTATCGTTCAGATTTCCTGA
CCATTGGTGGATTTGACATGGAAGTGAAAGGTTGGGGTGGAGAAGATGTTCATCTTTATCGAAAATACTT
ACATGGTGACCTCATTGTGATTCGGACTCCGGTTCCTGGTCTTTTCCACCTCTGGCATGAAAAGCGCTGT
GCTGATGAGCTGACCCCCGAGCAGTACCGCATGTGCATCCAGTCTAAAGCCATGAATGAGGCCTCTCACT
CCCACCTGGGAATGCTGGTCTTCAGGGAGGAAATAGAGACGCATCTTCATAAACAGGCATACAGGACAAA
CAGTGAAGCTGTTGGTTGA

Translation (542 aa):
MPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASLPGVVGENYGKEYYQALLQEQEEHYQT
RATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKEQAPSDLLEFLHSQIDKAEVSIGAKLP
SEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEK
LIFNENDFVEGYYRTERDKGTQYELFFKKADLTEYRHVTLFRPFGPLMKVKSEMIDITRSIINIIVPLAE
RTEAFVQFMQNFRDVCIHQDKKIHLTVVYFGKEGLSKVKSILESVTSESNFHNYTLVSLNEEFNRGRGLN
VGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQEVPPPVEQQLVH
KKDSGFWRDFGFGMTCQYRSDFLTIGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRC
ADELTPEQYRMCIQSKAMNEASHSHLGMLVFREEIETHLHKQAYRTNSEAVG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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