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Report for CCDS34417.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34417.2 Public Homo sapiens 6 STK19 24 110 108 CCDS HistoryNCBI Gene:8859Re-query CCDS DB by CCDS ID:34417.2Re-query CCDS DB by GeneID:8859See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34417.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375331.7 ENSP00000364480.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375331.7Link to Ensembl Protein Viewer:ENSP00000364480.3Re-query CCDS DB by Nucleotide ID:ENST00000375331Re-query CCDS DB by Protein ID:ENSP00000364480
Original member Current member EBI ENST00000685781.1 ENSP00000509445.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685781.1Link to Ensembl Protein Viewer:ENSP00000509445.1Re-query CCDS DB by Nucleotide ID:ENST00000685781Re-query CCDS DB by Protein ID:ENSP00000509445
Original member Current member NCBI NM_004197.2 NP_004188.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004197.2Link to Protein Sequence:NP_004188.2Re-query CCDS DB by Nucleotide ID:NM_004197Re-query CCDS DB by Protein ID:NP_004188Link to BLAST:NP_004188.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004188.2 254 P49842-4 254 100% 0 0

Chromosomal Locations for CCDS 34417.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31972412 31972511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31972621 31972757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31978903 31978998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31979414 31979553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31980451 31980548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31980654 31980801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31981004 31981049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGAGCTGGAAGAGGCATCACCTGATCCCGGAGACCTTTGGAGTTAAGAGGCGGCGGAAGCGAGGGCCTG
TGGAGTCGGATCCTCTTCGGGGTGAGCCAGGGTCGGCGCGCGCGGCTGTCTCAGAACTCATGCAGCTGTT
CCCGCGAGGCCTGTTTGAGGACGCGCTGCCGCCCATCGTGCTGAGGAGCCAGGTGTACAGCCTTGTGCCT
GACAGGACCGTGGCCGACCGGCAGCTGAAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTGG
GCTTCGACTTGGATGCCCATGGAATTATCTTCACTGAGGACTACAGGACCAGAGTCCTCAAGGCCTGTGA
TGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGT
TTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCACGCATCTGGTGAATGCTG
GAGTCCTCACCGTCCGAGATGCTGGGAGCTGGTGGCTAGCTGTGCCTGGAGCTGGGAGATTCATCAAGTA
CTTTGTTAAAGGGCGCCAGGCTGTCCTTAGCATGGTCCGGAAGGCAAAGTACCGGGAACTGCTCCTATCA
GAGCTCCTGGGCCGGCGGGCGCCTGTCGTGGTGCGGCTTGGCCTCACCTACCATGTGCACGACCTCATTG
GGGCCCAGCTAGTGGACTGCATCTCTACCACTTCAGGAACCCTCCTCCGCCTGCCAGAGACATGA

Translation (254 aa):
MSWKRHHLIPETFGVKRRRKRGPVESDPLRGEPGSARAAVSELMQLFPRGLFEDALPPIVLRSQVYSLVP
DRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVLKACDGRPYAGAVQKFLASVLPACGDLS
FQQDQMTQTFGFRDSEITHLVNAGVLTVRDAGSWWLAVPGAGRFIKYFVKGRQAVLSMVRKAKYRELLLS
ELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTSGTLLRLPET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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