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Report for CCDS180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
180.1 Public Homo sapiens 1 PADI4 24 110 108 CCDS HistoryNCBI Gene:23569Re-query CCDS DB by CCDS ID:180.1Re-query CCDS DB by GeneID:23569See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375448.4 ENSP00000364597.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375448.4Link to Ensembl Protein Viewer:ENSP00000364597.4Re-query CCDS DB by Nucleotide ID:ENST00000375448Re-query CCDS DB by Protein ID:ENSP00000364597
Original member Current member NCBI NM_012387.3 NP_036519.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012387.3Link to Protein Sequence:NP_036519.2Re-query CCDS DB by Nucleotide ID:NM_012387Re-query CCDS DB by Protein ID:NP_036519Link to BLAST:NP_036519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036519.2 663 Q9UM07 663 100% 0 0

Chromosomal Locations for CCDS 180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 17308223 17308314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17330969 17331149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17333943 17334009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17336159 17336226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17338038 17338155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17339688 17339813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17341943 17342121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17342299 17342402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17346028 17346139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17347941 17348048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17354533 17354687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17355983 17356127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17356357 17356459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17358838 17358908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17359280 17359408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17363522 17363755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGCCCAGGGGACATTGATCCGTGTGACCCCAGAGCAGCCCACCCATGCCGTGTGTGTGCTGGGCACCT
TGACTCAGCTTGACATCTGCAGCTCTGCCCCTGAGGACTGCACGTCCTTCAGCATCAACGCCTCCCCAGG
GGTGGTCGTGGATATTGCCCACGGCCCTCCAGCCAAGAAGAAATCCACAGGTTCCTCCACATGGCCCCTG
GACCCTGGGGTAGAGGTGACCCTGACGATGAAAGTGGCCAGTGGTAGCACAGGCGACCAGAAGGTTCAGA
TTTCATACTACGGACCCAAGACTCCACCAGTCAAAGCTCTACTCTACCTCACCGGGGTGGAAATCTCCTT
GTGCGCAGACATCACCCGCACCGGCAAAGTGAAGCCAACCAGAGCTGTGAAAGATCAGAGGACCTGGACC
TGGGGCCCTTGTGGACAGGGTGCCATCCTGCTGGTGAACTGTGACAGAGACAATCTCGAATCTTCTGCCA
TGGACTGCGAGGATGATGAAGTGCTTGACAGCGAAGACCTGCAGGACATGTCGCTGATGACCCTGAGCAC
GAAGACCCCCAAGGACTTCTTCACAAACCATACACTGGTGCTCCACGTGGCCAGGTCTGAGATGGACAAA
GTGAGGGTGTTTCAGGCCACACGGGGCAAACTGTCCTCCAAGTGCAGCGTAGTCTTGGGTCCCAAGTGGC
CCTCTCACTACCTGATGGTCCCCGGTGGAAAGCACAACATGGACTTCTACGTGGAGGCCCTCGCTTTCCC
GGACACCGACTTCCCGGGGCTCATTACCCTCACCATCTCCCTGCTGGACACGTCCAACCTGGAGCTCCCC
GAGGCTGTGGTGTTCCAAGACAGCGTGGTCTTCCGCGTGGCGCCCTGGATCATGACCCCCAACACCCAGC
CCCCGCAGGAGGTGTACGCGTGCAGTATTTTTGAAAATGAGGACTTCCTGAAGTCAGTGACTACTCTGGC
CATGAAAGCCAAGTGCAAGCTGACCATCTGCCCTGAGGAGGAGAACATGGATGACCAGTGGATGCAGGAT
GAAATGGAGATCGGCTACATCCAAGCCCCACACAAAACGCTGCCCGTGGTCTTCGACTCTCCAAGGAACA
GAGGCCTGAAGGAGTTTCCCATCAAACGCGTGATGGGTCCAGATTTTGGCTATGTAACTCGAGGGCCCCA
AACAGGGGGTATCAGTGGACTGGACTCCTTTGGGAACCTGGAAGTGAGCCCCCCAGTCACAGTCAGGGGC
AAGGAATACCCGCTGGGCAGGATTCTCTTCGGGGACAGCTGTTATCCCAGCAATGACAGCCGGCAGATGC
ACCAGGCCCTGCAGGACTTCCTCAGTGCCCAGCAGGTGCAGGCCCCTGTGAAGCTCTATTCTGACTGGCT
GTCCGTGGGCCACGTGGACGAGTTCCTGAGCTTTGTGCCAGCACCCGACAGGAAGGGCTTCCGGCTGCTC
CTGGCCAGCCCCAGGTCCTGCTACAAACTGTTCCAGGAGCAGCAGAATGAGGGCCACGGGGAGGCCCTGC
TGTTCGAAGGGATCAAGAAAAAAAAACAGCAGAAAATAAAGAACATTCTGTCAAACAAGACATTGAGAGA
ACATAATTCATTTGTGGAGAGATGCATCGACTGGAACCGCGAGCTGCTGAAGCGGGAGCTGGGCCTGGCC
GAGAGTGACATCATTGACATCCCGCAGCTCTTCAAGCTCAAAGAGTTCTCTAAGGCGGAAGCTTTTTTCC
CCAACATGGTGAACATGCTGGTGCTAGGGAAGCACCTGGGCATCCCCAAGCCCTTCGGGCCCGTCATCAA
CGGCCGCTGCTGCCTGGAGGAGAAGGTGTGTTCCCTGCTGGAGCCACTGGGCCTCCAGTGCACCTTCATC
AACGACTTCTTCACCTACCACATCAGGCATGGGGAGGTGCACTGCGGCACCAACGTGCGCAGAAAGCCCT
TCTCCTTCAAGTGGTGGAACATGGTGCCCTGA

Translation (663 aa):
MAQGTLIRVTPEQPTHAVCVLGTLTQLDICSSAPEDCTSFSINASPGVVVDIAHGPPAKKKSTGSSTWPL
DPGVEVTLTMKVASGSTGDQKVQISYYGPKTPPVKALLYLTGVEISLCADITRTGKVKPTRAVKDQRTWT
WGPCGQGAILLVNCDRDNLESSAMDCEDDEVLDSEDLQDMSLMTLSTKTPKDFFTNHTLVLHVARSEMDK
VRVFQATRGKLSSKCSVVLGPKWPSHYLMVPGGKHNMDFYVEALAFPDTDFPGLITLTISLLDTSNLELP
EAVVFQDSVVFRVAPWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQD
EMEIGYIQAPHKTLPVVFDSPRNRGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRG
KEYPLGRILFGDSCYPSNDSRQMHQALQDFLSAQQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLL
LASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNKTLREHNSFVERCIDWNRELLKRELGLA
ESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLEEKVCSLLEPLGLQCTFI
NDFFTYHIRHGEVHCGTNVRRKPFSFKWWNMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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