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Report for CCDS9532.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9532.2 Public Homo sapiens 13 PCID2 24 110 108 CCDS HistoryNCBI Gene:55795Re-query CCDS DB by CCDS ID:9532.2Re-query CCDS DB by GeneID:55795See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 9532.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9532.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337344.9 ENSP00000337405.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337344.9Link to Ensembl Protein Viewer:ENSP00000337405.4Re-query CCDS DB by Nucleotide ID:ENST00000337344Re-query CCDS DB by Protein ID:ENSP00000337405
Original member Current member EBI ENST00000375477.5 ENSP00000364626.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375477.5Link to Ensembl Protein Viewer:ENSP00000364626.1Re-query CCDS DB by Nucleotide ID:ENST00000375477Re-query CCDS DB by Protein ID:ENSP00000364626
Original member Current member EBI ENST00000375479.6 ENSP00000364628.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375479.6Link to Ensembl Protein Viewer:ENSP00000364628.2Re-query CCDS DB by Nucleotide ID:ENST00000375479Re-query CCDS DB by Protein ID:ENSP00000364628
Original member Current member NCBI NM_001127202.4 NP_001120674.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001127202.4Link to Protein Sequence:NP_001120674.1Re-query CCDS DB by Nucleotide ID:NM_001127202Re-query CCDS DB by Protein ID:NP_001120674Link to BLAST:NP_001120674.1
Original member Current member NCBI NM_001127203.4 NP_001120675.1 Accepted alive Link to Nucleotide Sequence:NM_001127203.4Link to Protein Sequence:NP_001120675.1Re-query CCDS DB by Nucleotide ID:NM_001127203Re-query CCDS DB by Protein ID:NP_001120675Link to BLAST:NP_001120675.1
Original member Current member NCBI NM_018386.5 NP_060856.2 Accepted alive Link to Nucleotide Sequence:NM_018386.5Link to Protein Sequence:NP_060856.2Re-query CCDS DB by Nucleotide ID:NM_018386Re-query CCDS DB by Protein ID:NP_060856Link to BLAST:NP_060856.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120674.1 399 Q5JVF3-1 399 100% 0 0
NP_001120675.1 399 Q5JVF3-1 399 100% 0 0
NP_060856.2 399 Q5JVF3-1 399 100% 0 0

Chromosomal Locations for CCDS 9532.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 113178198 113178287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113178966 113179089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113179917 113180042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113180158 113180231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113181130 113181230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113184346 113184487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113185485 113185560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113190872 113190975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113195071 113195125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113196181 113196222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113197178 113197243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113198191 113198264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113200427 113200516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113208599 113208634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGCGCACATTACCATTAACCAGTACCTGCAGCAGGTGTACGAAGCCATCGACAGCAGAGATGGAGCAT
CTTGTGCAGAGTTGGTGTCTTTTAAACATCCTCATGTTGCAAACCCACGACTTCAAATGGCCTCTCCAGA
GGAGAAGTGTCAACAAGTCTTGGAACCCCCTTATGATGAAATGTTTGCAGCTCATTTAAGGTGCACTTAT
GCAGTGGGGAATCATGACTTCATAGAGGCATACAAGTGCCAGACCGTGATAGTCCAATCATTCTTGCGAG
CATTCCAGGCCCACAAAGAAGAAAACTGGGCTCTGCCTGTCATGTATGCAGTAGCGCTTGACCTTCGAGT
GTTTGCCAATAATGCAGATCAACAGTTGGTAAAGAAAGGAAAAAGCAAAGTTGGGGACATGTTGGAAAAA
GCAGCAGAGTTACTGATGAGCTGTTTCCGGGTCTGTGCCAGCGACACCCGTGCTGGTATAGAGGACTCTA
AGAAGTGGGGCATGCTGTTTCTGGTGAACCAGCTGTTTAAAATCTACTTCAAGATCAACAAACTCCATTT
ATGTAAACCCCTAATTAGAGCAATTGACAGCTCAAACCTGAAAGACGATTACAGCACTGCACAGAGAGTA
ACATACAAATACTACGTTGGACGCAAGGCTATGTTTGACAGCGATTTTAAGCAAGCTGAGGAGTACCTGT
CATTTGCCTTTGAGCATTGTCACCGTTCTAGTCAGAAGAACAAAAGGATGATTCTGATCTATTTGCTTCC
AGTAAAAATGCTATTGGGTCACATGCCCACTGTGGAGCTCCTGAAAAAGTATCACCTGATGCAGTTTGCG
GAAGTAACCAGAGCTGTGAGCGAGGGCAACCTGCTGCTGCTGCACGAGGCGCTGGCGAAGCACGAGGCCT
TCTTCATTCGCTGCGGAATCTTCCTCATCCTGGAGAAGCTGAAGATCATCACCTACAGGAACCTCTTTAA
GAAAGTGTATTTGTTACTGAAAACACACCAGCTGTCTCTGGATGCTTTTCTGGTTGCCTTGAAGTTCATG
CAGGTGGAGGACGTGGACATTGACGAAGTTCAGTGTATTCTGGCTAACTTGATATACATGGGACACGTCA
AAGGCTACATATCGCATCAGCATCAGAAGCTGGTGGTCAGCAAGCAGAACCCATTTCCTCCCCTGTCCAC
GGTGTGTTGA

Translation (399 aa):
MAHITINQYLQQVYEAIDSRDGASCAELVSFKHPHVANPRLQMASPEEKCQQVLEPPYDEMFAAHLRCTY
AVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVALDLRVFANNADQQLVKKGKSKVGDMLEK
AAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKDDYSTAQRV
TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFA
EVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFM
QVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLSTVC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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