NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14213.1 Public Homo sapiens X PCYT1B 24 110 108 CCDS HistoryNCBI Gene:9468Re-query CCDS DB by CCDS ID:14213.1Re-query CCDS DB by GeneID:9468See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14213.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379144.7 ENSP00000368439.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379144.7Link to Ensembl Protein Viewer:ENSP00000368439.2Re-query CCDS DB by Nucleotide ID:ENST00000379144Re-query CCDS DB by Protein ID:ENSP00000368439
Original member Current member NCBI NM_004845.5 NP_004836.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004845.5Link to Protein Sequence:NP_004836.2Re-query CCDS DB by Nucleotide ID:NM_004845Re-query CCDS DB by Protein ID:NP_004836Link to BLAST:NP_004836.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004836.2 369 Q9Y5K3-1 369 100% 0 0

Chromosomal Locations for CCDS 14213.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 24562293 24562505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24575130 24575318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24579316 24579458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24587241 24587319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24590023 24590174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24607745 24607861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24618985 24619084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 24646989 24647105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGCCAGTAGTTACCACTGATGCTGAGTCAGAAACAGGTATCCCAAAATCCCTTTCCAATGAGCCTCCCT
CAGAAACCATGGAGGAAATAGAGCACACATGCCCACAGCCTCGACTGACCCTGACTGCACCTGCCCCATT
TGCTGATGAAACCAACTGCCAGTGTCAAGCACCCCATGAAAAACTGACCATTGCTCAGGCCCGCTTAGGA
ACACCAGCTGACAGGCCTGTCAGAGTATACGCCGATGGAATATTTGACCTCTTCCACTCAGGTCATGCAA
GAGCCCTTATGCAAGCAAAAACACTGTTTCCCAACAGCTACTTGTTGGTAGGAGTTTGCAGTGATGATCT
CACCCACAAATTCAAAGGTTTCACCGTGATGAATGAAGCCGAGAGATACGAAGCTCTCAGACACTGTCGC
TACGTAGACGAAGTTATCAGAGATGCTCCCTGGACACTCACGCCAGAGTTTCTGGAAAAACACAAGATTG
ACTTTGTGGCTCATGATGACATTCCGTATTCCTCTGCTGGCTCTGATGATGTTTACAAGCACATAAAGGA
AGCAGGGATGTTCGTTCCAACGCAGAGAACAGAAGGCATCTCAACATCGGACATCATTACCAGAATTGTT
CGTGACTATGATGTTTATGCCCGACGTAACCTCCAGAGAGGGTATACAGCCAAGGAACTGAATGTCAGCT
TTATAAATGAGAAGAGGTACCGTTTCCAGAACCAAGTGGACAAAATGAAGGAAAAAGTCAAGAATGTGGA
GGAAAGATCAAAGGAATTTGTGAACAGAGTGGAAGAAAAGAGCCATGATCTAATTCAAAAGTGGGAAGAG
AAGTCAAGGGAATTCATTGGCAACTTCCTAGAACTGTTTGGACCTGATGGAGCATGGAAGCAGATGTTCC
AGGAGAGGAGCAGCCGGATGCTGCAGGCCTTATCCCCGAAGCAGAGCCCTGTGAGCAGCCCAACCCGGAG
CCGGTCCCCTTCCCGCTCCCCATCGCCCACCTTCTCATGGCTTCCACTCAAAACCTCACCCCCTTCCTCA
CCCAAAGCAGCCTCAGCCTCTATCAGCAGCATGAGCGAGGGGGATGAGGATGAAAAGTAG

Translation (369 aa):
MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHEKLTIAQARLG
TPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCR
YVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIV
RDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEE
KSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSS
PKAASASISSMSEGDEDEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH