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Report for CCDS3499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3499.1 Public Homo sapiens 4 TMEM165 24 110 108 CCDS HistoryNCBI Gene:55858Re-query CCDS DB by CCDS ID:3499.1Re-query CCDS DB by GeneID:55858See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3499.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381334.10 ENSP00000370736.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381334.10Link to Ensembl Protein Viewer:ENSP00000370736.5Re-query CCDS DB by Nucleotide ID:ENST00000381334Re-query CCDS DB by Protein ID:ENSP00000370736
Original member Current member NCBI NM_018475.5 NP_060945.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018475.5Link to Protein Sequence:NP_060945.2Re-query CCDS DB by Nucleotide ID:NM_018475Re-query CCDS DB by Protein ID:NP_060945Link to BLAST:NP_060945.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060945.2 324 Q9HC07-1 324 100% 0 0

Chromosomal Locations for CCDS 3499.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 55396190 55396396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55411614 55411839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55417072 55417247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55417803 55417985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55424538 55424643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55425376 55425452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCGGCCGCGGCTCCAGGGAACGGCCGCGCATCGGCGCCCCGGCTGCTTCTGCTCTTTCTGGTTCCGC
TGCTGTGGGCCCCGGCTGCGGTCCGGGCCGGCCCAGATGAAGACCTTAGCCACCGGAACAAAGAACCGCC
GGCGCCGGCCCAGCAGCTGCAGCCGCAGCCTGTGGCTGTGCAGGGCCCCGAGCCGGCCCGGGTCGAGAAA
ATATTTACACCAGCAGCTCCAGTTCATACCAATAAAGAAGATCCTGCTACCCAAACTAATTTGGGATTTA
TCCATGCATTTGTCGCTGCCATATCAGTTATTATTGTATCTGAATTGGGTGATAAGACATTTTTTATAGC
AGCCATCATGGCAATGCGCTATAACCGCCTGACCGTGCTGGCTGGTGCAATGCTTGCCTTGGGACTAATG
ACATGCTTGTCAGTTTTGTTTGGCTATGCCACCACAGTCATCCCCAGGGTCTATACATACTATGTTTCAA
CTGTATTATTTGCCATTTTTGGCATTAGAATGCTTCGGGAAGGCTTAAAGATGAGCCCTGATGAGGGTCA
AGAGGAACTGGAAGAAGTTCAAGCTGAATTAAAGAAGAAAGATGAAGAATTTCAACGAACCAAACTTTTA
AATGGACCGGGAGATGTTGAAACGGGTACAAGCATAACAGTACCTCAGAAAAAGTGGTTGCATTTTATTT
CACCCATTTTTGTTCAAGCTCTTACATTAACATTCTTAGCAGAATGGGGTGATCGCTCTCAACTAACTAC
AATTGTATTGGCAGCTAGAGAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGTGC
ACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAG
GAGGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTTTAA

Translation (324 aa):
MAAAAPGNGRASAPRLLLLFLVPLLWAPAAVRAGPDEDLSHRNKEPPAPAQQLQPQPVAVQGPEPARVEK
IFTPAAPVHTNKEDPATQTNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLM
TCLSVLFGYATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLL
NGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLC
TGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISPDSGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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