CCDS Report for Consensus CDS

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Report for CCDS54094.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
54094.1	Public	Homo sapiens	17	NCOR1	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54094.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000395848.5	ENSP00000379189.1		Accepted	alive
		NCBI	NM_001190438.1	NP_001177367.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001177367.1	914	O75376-3	914	100%	0	0

Chromosomal Locations for CCDS 54094.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)

Genome Browser links:

Chromosome	Start	Stop
17	16091855	16092058
17	16098367	16098496
17	16101250	16101805
17	16108786	16108912
17	16117888	16118027
17	16119423	16119485
17	16121052	16121269
17	16126082	16126206
17	16137311	16137412
17	16138158	16138212
17	16139008	16139186
17	16143606	16143696
17	16146376	16146548
17	16149451	16149517
17	16151946	16151998
17	16153339	16153395
17	16158760	16158873
17	16164979	16165161
17	16194462	16194569

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGTCAAGTTCAGGTTATCCTCCCAACCAAGGAGCATTCAGCACAGAACAAAGTCGTTATCCTCCTCACT CTGTCCAGTATACATTTCCCAACACCCGCCACCAGCAGGATCCAGCATTCGGAGGCAAACATGAAGCTCC ATCCTCTCCAATTTCGGGGCAACCATGTGGAGATGATCAAAATGCTTCACCTTCAAAACTCTCAAAGGAA GAGTTAATACAGAGTATGGATCGTGTAGATCGAGAAATTGCAAAAGTAGAACAGCAGATCCTTAAACTGA AAAAGAAACAACAACAGCTTGAAGAAGAGGCAGCTAAACCTCCTGAGCCTGAGAAGCCCGTGTCCCCTCC TCCTGTGGAGCAGAAACACCGCAGTATTGTCCAAATTATTTATGATGAGAATCGGAAAAAAGCAGAAGAA GCTCATAAAATTTTTGAAGGTCTTGGCCCAAAAGTTGAACTGCCACTGTATAACCAGCCATCAGATACCA AGGTGTACCATGAGAACATCAAGACAAACCAGGTGATGAGGAAAAAACTCATTTTATTTTTTAAAAGAAG AAATCATGCAAGAAAACAAAGGGAACAAAAAATCTGCCAGCGTTATGATCAGCTCATGGAGGCATGGGAG AAAAAAGTGGACAGAATAGAAAATAATCCTCGGAGGAAAGCTAAAGAAAGCAAAACAAGGGAATACTATG AAAAGCAGTTTCCAGAAATTCGAAAACAAAGAGAACAGCAAGAAAGATTTCAGCGAGTTGGGCAGAGGGG AGCTGGTCTTTCAGCCACCATTGCTAGGAGTGAGCATGAGATTTCTGAAATTATTGATGGGCTCTCTGAG CAGGAGAATAATGAGAAACAAATGCGGCAGCTCTCTGTGATTCCACCTATGATGTTTGATGCAGAACAAA GACGAGTCAAGTTCATTAACATGAATGGGCTTATGGAGGACCCTATGAAAGTGTATAAAGATAGGCAGTT TATGAATGTTTGGACTGACCATGAAAAGGAGATCTTTAAGGACAAGTTTATCCAGCATCCAAAAAACTTT GGACTAATTGCATCATACTTGGAGAGGAAGAGTGTTCCTGATTGTGTTTTGTATTACTATTTAACCAAGA AAAATGAGAATTATAAAGCCCTCGTCAGAAGGAATTATGGGAAACGCAGAGGCAGAAACCAGCAAATTGC TCGACCCTCGCAAGAAGAAAAAGTAGAAGAAAAAGAAGAGGATAAAGCAGAAAAAACAGAAAAAAAAGAA GAAGAAAAGAAAGATGAAGAGGAAAAAGATGAAAAAGAAGACTCCAAAGAAAATACCAAGGAAAAGGACA AGATAGATGGTACAGCAGAAGAAACTGAGGAAAGAGAGCAAGCCACACCCCGGGGGCGAAAGACTGCCAA CAGTCAGGGCCGCCGTAAGGGCCGGATCACCAGGTCCATGACAAACGAAGCTGCAGCTGCCAGTGCTGCA GCCGCAGCGGCTACTGAAGAGCCCCCACCACCTCTGCCACCGCCACCAGAACCCATTTCTACAGAGCCTG TGGAGACCTCTCGATGGACAGAAGAAGAAATGGAAGTTGCTAAAAAAGGTCTAGTAGAACATGGTCGTAA CTGGGCAGCAATTGCTAAAATGGTGGGAACGAAAAGTGAAGCTCAATGTAAAAACTTCTATTTTAACTAT AAAAGGCGACACAATCTTGACAACCTCTTACAGCAGCATAAACAGAAAACTTCACGAAAACCTCGTGAAG AGCGAGATGTGTCTCAATGTGAAAGTGTCGCTTCCACTGTTTCTGCTCAGGAGGATGAAGATATTGAAGC CTCCAATGAAGAAGAAAATCCAGAAGACAGCGAAGGTGCAGAAAATAGTTCTGATACAGAAAGTGCTCCT TCTCCTTCACCAGTTGAAGCTGTCAAGCCCAGCGAGGACAGTCCTGAAAATGCTACTTCTCGAGGAAACA CAGAACCTGCGGTTGAGCTTGAGCCCACCACGGAAACTGCACCCAGTACATCTCCCTCCTTAGCAGTTCC AAGTACAAAACCAGCTGAAGATGAAAGTGTGGAGACCCAGGTGAATGACAGCATCAGTGCTGAGACAGCA GAGCAGATGGATGTAGATCAGCAGGAGCACAGTGCTGAAGAGGGTTCTGTTTGTGATCCCCCACCCGCTA CCAAAGCTGACTCTGTGGACGTTGAAGTGAGGGTGCCAGAAAACCATGCATCTAAAGTTGAAGGTGATAA TACCAAAGAAAGAGACTTGGATAGAGCCAGTGAGAAGGTGGAACCTAGAGATGAAGATTTGGTGGTAGCT CAGCAAATAAATGCCCAAAGGCCCGAGCCCCAGTCAGACAATGATTCCAGTGCCACGTGCAGCGCTGATG AGGATGTGGATGGAGAGCCAGAGAGGCAGAGAATGTTTCCTATGGACTCAAAGCCTTCACTGTTAAACCC CACTGGATCTATACTCGTCTCATCTCCGTTAAAACCAAATCCACTGGATCTGCCACAGCTTCAGCATCGA GCTGCTGTTATCCCACCAATGGTATCCTGCACCCCATGTAACATACCAATTGGAACCCCAGTGAGCGGCT ATGCTCTCTACCAGCGACACATTAAAGCAATGCATGAGTCAGCACTCCTGGAGGAGCAGCGGCAGAGACA AGAACAGATAGATTTGGAATGTAGAAGTTCTACAAGTCCATGTGGCACATCCAAGAGTCCAAACAGAGAG TGGGAAGGTAGGTAG
Translation (914 aa):
MSSSGYPPNQGAFSTEQSRYPPHSVQYTFPNTRHQQDPAFGGKHEAPSSPISGQPCGDDQNASPSKLSKE ELIQSMDRVDREIAKVEQQILKLKKKQQQLEEEAAKPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAEE AHKIFEGLGPKVELPLYNQPSDTKVYHENIKTNQVMRKKLILFFKRRNHARKQREQKICQRYDQLMEAWE KKVDRIENNPRRKAKESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSE QENNEKQMRQLSVIPPMMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKNF GLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKE EEKKDEEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKTANSQGRRKGRITRSMTNEAAAASAA AAAATEEPPPPLPPPPEPISTEPVETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNY KRRHNLDNLLQQHKQKTSRKPREERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEGAENSSDTESAP SPSPVEAVKPSEDSPENATSRGNTEPAVELEPTTETAPSTSPSLAVPSTKPAEDESVETQVNDSISAETA EQMDVDQQEHSAEEGSVCDPPPATKADSVDVEVRVPENHASKVEGDNTKERDLDRASEKVEPRDEDLVVA QQINAQRPEPQSDNDSSATCSADEDVDGEPERQRMFPMDSKPSLLNPTGSILVSSPLKPNPLDLPQLQHR AAVIPPMVSCTPCNIPIGTPVSGYALYQRHIKAMHESALLEEQRQRQEQIDLECRSSTSPCGTSKSPNRE WEGR

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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